miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23584 5' -55.2 NC_005261.1 + 90859 0.66 0.928253
Target:  5'- -gAC-GGUUgUGCGcGCGcuggUGCCCGUCGg -3'
miRNA:   3'- gaUGuUCAGgACGC-UGC----ACGGGCAGC- -5'
23584 5' -55.2 NC_005261.1 + 132479 0.66 0.928253
Target:  5'- -gGCAGcgccucgccGUCCUGgGACGcGCCCGaccgCGa -3'
miRNA:   3'- gaUGUU---------CAGGACgCUGCaCGGGCa---GC- -5'
23584 5' -55.2 NC_005261.1 + 89260 0.66 0.928253
Target:  5'- aCUACGccUCggGCGAgGUGCCCGUg- -3'
miRNA:   3'- -GAUGUucAGgaCGCUgCACGGGCAgc -5'
23584 5' -55.2 NC_005261.1 + 120447 0.66 0.928253
Target:  5'- -gGCGugcgCCUGCucuccgcgauaGACGgGCCCGUCGa -3'
miRNA:   3'- gaUGUuca-GGACG-----------CUGCaCGGGCAGC- -5'
23584 5' -55.2 NC_005261.1 + 135518 0.66 0.928253
Target:  5'- -gACGAGUgCCUGaCGugGUGCaaguuCGUUGc -3'
miRNA:   3'- gaUGUUCA-GGAC-GCugCACGg----GCAGC- -5'
23584 5' -55.2 NC_005261.1 + 47538 0.66 0.922851
Target:  5'- -gACGGcGUUCccggGCGcggcgaaguugGCGUGCCCGUCGc -3'
miRNA:   3'- gaUGUU-CAGGa---CGC-----------UGCACGGGCAGC- -5'
23584 5' -55.2 NC_005261.1 + 27748 0.66 0.917208
Target:  5'- -aGCuuGUCCUGCGugGUccacgagagcaGCCCGcCc -3'
miRNA:   3'- gaUGuuCAGGACGCugCA-----------CGGGCaGc -5'
23584 5' -55.2 NC_005261.1 + 62247 0.66 0.911324
Target:  5'- gCUGCAcGUCCgGCGucaccugguaGCGgcGCCCGUUGu -3'
miRNA:   3'- -GAUGUuCAGGaCGC----------UGCa-CGGGCAGC- -5'
23584 5' -55.2 NC_005261.1 + 1772 0.67 0.898844
Target:  5'- -cGCGAGUCuggggCUGCcGCGUGCCCcugCGa -3'
miRNA:   3'- gaUGUUCAG-----GACGcUGCACGGGca-GC- -5'
23584 5' -55.2 NC_005261.1 + 37447 0.67 0.898844
Target:  5'- cCUGCugGUCCUGCGgACGcGCCUcuaCGa -3'
miRNA:   3'- -GAUGuuCAGGACGC-UGCaCGGGca-GC- -5'
23584 5' -55.2 NC_005261.1 + 132676 0.67 0.898195
Target:  5'- gUGCGAGgacaagaugggcuUCCgcGUGGcCGUGCCCGUCc -3'
miRNA:   3'- gAUGUUC-------------AGGa-CGCU-GCACGGGCAGc -5'
23584 5' -55.2 NC_005261.1 + 98805 0.67 0.892252
Target:  5'- -aACGGGUCgCcgGCGGCGUGCCgGa-- -3'
miRNA:   3'- gaUGUUCAG-Ga-CGCUGCACGGgCagc -5'
23584 5' -55.2 NC_005261.1 + 52083 0.67 0.878382
Target:  5'- gUACAGcgaCUGCGACGUGCUggggaacuacgCGUCGu -3'
miRNA:   3'- gAUGUUcagGACGCUGCACGG-----------GCAGC- -5'
23584 5' -55.2 NC_005261.1 + 5251 0.67 0.878382
Target:  5'- gUGCGGGUCgCggugcgcgGCGACGaaggcgGCCaCGUCGg -3'
miRNA:   3'- gAUGUUCAG-Ga-------CGCUGCa-----CGG-GCAGC- -5'
23584 5' -55.2 NC_005261.1 + 19868 0.67 0.871112
Target:  5'- -cGCGAGaCCccGcCGGCGgGCCCGUCGu -3'
miRNA:   3'- gaUGUUCaGGa-C-GCUGCaCGGGCAGC- -5'
23584 5' -55.2 NC_005261.1 + 12431 0.67 0.871112
Target:  5'- -gGCgGAGggCUUGCGGCGUcgGCCgCGUCGg -3'
miRNA:   3'- gaUG-UUCa-GGACGCUGCA--CGG-GCAGC- -5'
23584 5' -55.2 NC_005261.1 + 122485 0.67 0.871112
Target:  5'- -gGCGAGgcggucggCCUGCGcGCGgacgGCcCCGUCGc -3'
miRNA:   3'- gaUGUUCa-------GGACGC-UGCa---CG-GGCAGC- -5'
23584 5' -55.2 NC_005261.1 + 91338 0.68 0.863626
Target:  5'- aCUACAAGcUCCUGCuGCGcagcgagGCCCGcCc -3'
miRNA:   3'- -GAUGUUC-AGGACGcUGCa------CGGGCaGc -5'
23584 5' -55.2 NC_005261.1 + 74636 0.68 0.863626
Target:  5'- gCUGCGc-UUCUGgGACGaGCCCGUCu -3'
miRNA:   3'- -GAUGUucAGGACgCUGCaCGGGCAGc -5'
23584 5' -55.2 NC_005261.1 + 68314 0.68 0.863626
Target:  5'- uCUGCGGccgCUU-CGACGUGCCgGUCGg -3'
miRNA:   3'- -GAUGUUca-GGAcGCUGCACGGgCAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.