miRNA display CGI


Results 41 - 60 of 499 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23586 5' -58.5 NC_005261.1 + 109623 0.66 0.822748
Target:  5'- gCCaCAGcucCGCC-AGCUCG-GCGCGGGc -3'
miRNA:   3'- gGG-GUCu--GUGGaUUGGGCuCGCGCCC- -5'
23586 5' -58.5 NC_005261.1 + 82734 0.66 0.822748
Target:  5'- gUCCAGccGCGCC-AGCCCGucugcgaucGCGCGGu -3'
miRNA:   3'- gGGGUC--UGUGGaUUGGGCu--------CGCGCCc -5'
23586 5' -58.5 NC_005261.1 + 29886 0.66 0.822748
Target:  5'- gCCgCCAG-CGCCcgGGCCCGcggcAGCGCGcGa -3'
miRNA:   3'- -GG-GGUCuGUGGa-UUGGGC----UCGCGC-Cc -5'
23586 5' -58.5 NC_005261.1 + 58777 0.66 0.822748
Target:  5'- cCCCCAGcGCGCC-GGCCagCGcGCGCaGGa -3'
miRNA:   3'- -GGGGUC-UGUGGaUUGG--GCuCGCGcCC- -5'
23586 5' -58.5 NC_005261.1 + 25456 0.66 0.822748
Target:  5'- aUCCAGAC-CC-AGCCgGGGCuugaGUGGGa -3'
miRNA:   3'- gGGGUCUGuGGaUUGGgCUCG----CGCCC- -5'
23586 5' -58.5 NC_005261.1 + 15819 0.66 0.822748
Target:  5'- aCCCagaagagcaaCAGGCACCgcAUCgCGAGCGCGc- -3'
miRNA:   3'- -GGG----------GUCUGUGGauUGG-GCUCGCGCcc -5'
23586 5' -58.5 NC_005261.1 + 19565 0.66 0.822748
Target:  5'- gCCC-GcCGCCcucagcCCCGAGCGCGcGGc -3'
miRNA:   3'- gGGGuCuGUGGauu---GGGCUCGCGC-CC- -5'
23586 5' -58.5 NC_005261.1 + 5105 0.66 0.822748
Target:  5'- gCCaCAGcucCGCC-AGCUCG-GCGCGGGc -3'
miRNA:   3'- gGG-GUCu--GUGGaUUGGGCuCGCGCCC- -5'
23586 5' -58.5 NC_005261.1 + 134403 0.66 0.822748
Target:  5'- gCCgCCAG-CGCCcgGGCCCGcggcAGCGCGcGa -3'
miRNA:   3'- -GG-GGUCuGUGGa-UUGGGC----UCGCGC-Cc -5'
23586 5' -58.5 NC_005261.1 + 79092 0.66 0.822748
Target:  5'- gCCCgGGGCGCgCcGGCCUGAGUcggugGcCGGGg -3'
miRNA:   3'- -GGGgUCUGUG-GaUUGGGCUCG-----C-GCCC- -5'
23586 5' -58.5 NC_005261.1 + 83429 0.66 0.822748
Target:  5'- aCCUGGugGCCU-ACgCGgaGGCGgCGGGg -3'
miRNA:   3'- gGGGUCugUGGAuUGgGC--UCGC-GCCC- -5'
23586 5' -58.5 NC_005261.1 + 129973 0.66 0.822748
Target:  5'- aUCCAGAC-CC-AGCCgGGGCuugaGUGGGa -3'
miRNA:   3'- gGGGUCUGuGGaUUGGgCUCG----CGCCC- -5'
23586 5' -58.5 NC_005261.1 + 85255 0.66 0.822748
Target:  5'- cCCCCGccugccGGCGCCgca-CCG-GCGCGGc -3'
miRNA:   3'- -GGGGU------CUGUGGauugGGCuCGCGCCc -5'
23586 5' -58.5 NC_005261.1 + 41074 0.66 0.822748
Target:  5'- aCCCAGccggccgggccgGCGCC-AGCgccuCCGAGCGUGGc -3'
miRNA:   3'- gGGGUC------------UGUGGaUUG----GGCUCGCGCCc -5'
23586 5' -58.5 NC_005261.1 + 64489 0.66 0.822748
Target:  5'- gCCguGGCACCgGACCCccGCGCGc- -3'
miRNA:   3'- gGGguCUGUGGaUUGGGcuCGCGCcc -5'
23586 5' -58.5 NC_005261.1 + 112473 0.66 0.822748
Target:  5'- uCCCCAGGgugggcaaAUCgauCgCCGAGCGCGGc -3'
miRNA:   3'- -GGGGUCUg-------UGGauuG-GGCUCGCGCCc -5'
23586 5' -58.5 NC_005261.1 + 108334 0.66 0.822748
Target:  5'- gCUCGcGCGCUgccgcgGGCCCGGGCGCuGGc -3'
miRNA:   3'- gGGGUcUGUGGa-----UUGGGCUCGCGcCC- -5'
23586 5' -58.5 NC_005261.1 + 102287 0.66 0.822748
Target:  5'- -gCCGGGCucggGCCUGggcGCCCGcugggcugcGGCGCuGGGg -3'
miRNA:   3'- ggGGUCUG----UGGAU---UGGGC---------UCGCG-CCC- -5'
23586 5' -58.5 NC_005261.1 + 75799 0.66 0.822748
Target:  5'- gCCCGGcgaccggcuCGCgCUGGCCucggCGGGCGCGGa -3'
miRNA:   3'- gGGGUCu--------GUG-GAUUGG----GCUCGCGCCc -5'
23586 5' -58.5 NC_005261.1 + 40996 0.66 0.822748
Target:  5'- aCCCAGccggccgggccgGCGCC-AGCgccuCCGAGCGUGGc -3'
miRNA:   3'- gGGGUC------------UGUGGaUUG----GGCUCGCGCCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.