miRNA display CGI


Results 1 - 20 of 338 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23588 3' -60.8 NC_005261.1 + 138126 0.67 0.616663
Target:  5'- cCGgcgCg-GGCGGCGgGGCCCggggGCGcGCCc -3'
miRNA:   3'- -GCa--GagCCGCCGCaUCGGGa---CGU-CGG- -5'
23588 3' -60.8 NC_005261.1 + 137994 0.74 0.271228
Target:  5'- gCGgCUgCGGCGGCGgcugcggcGGCCC-GCAGCCc -3'
miRNA:   3'- -GCaGA-GCCGCCGCa-------UCGGGaCGUCGG- -5'
23588 3' -60.8 NC_005261.1 + 136905 0.67 0.626607
Target:  5'- gCGgcgCGGCGGCGUcccggAGCgCgUGCcGCCg -3'
miRNA:   3'- -GCagaGCCGCCGCA-----UCG-GgACGuCGG- -5'
23588 3' -60.8 NC_005261.1 + 136900 0.66 0.70567
Target:  5'- uGUaCUgGcGUGGUGUGGgCCgcGCGGCCg -3'
miRNA:   3'- gCA-GAgC-CGCCGCAUCgGGa-CGUCGG- -5'
23588 3' -60.8 NC_005261.1 + 136758 0.66 0.676239
Target:  5'- ---gUCGGUGGUGaggAGCUCgUGCAGCg -3'
miRNA:   3'- gcagAGCCGCCGCa--UCGGG-ACGUCGg -5'
23588 3' -60.8 NC_005261.1 + 135077 0.71 0.377911
Target:  5'- -uUC-CGGCGGCGggcucgcGGCCCgGCGGCg -3'
miRNA:   3'- gcAGaGCCGCCGCa------UCGGGaCGUCGg -5'
23588 3' -60.8 NC_005261.1 + 135028 0.7 0.454182
Target:  5'- gCGgccgCGGCGGCGaGGCcgacgCCUGCGGCg -3'
miRNA:   3'- -GCaga-GCCGCCGCaUCG-----GGACGUCGg -5'
23588 3' -60.8 NC_005261.1 + 134217 0.7 0.445294
Target:  5'- gGUCgcggCGGCcggcagcgucGGCGUGgcgcacgcGCCCUGCgcGGCCg -3'
miRNA:   3'- gCAGa---GCCG----------CCGCAU--------CGGGACG--UCGG- -5'
23588 3' -60.8 NC_005261.1 + 133936 0.7 0.454182
Target:  5'- ----gCGGCGGCcgcggGGCCC-GCGGCCg -3'
miRNA:   3'- gcagaGCCGCCGca---UCGGGaCGUCGG- -5'
23588 3' -60.8 NC_005261.1 + 133812 0.66 0.695907
Target:  5'- -cUC-CGGCgaGGCcUGGCCCgGCAGCg -3'
miRNA:   3'- gcAGaGCCG--CCGcAUCGGGaCGUCGg -5'
23588 3' -60.8 NC_005261.1 + 132696 0.66 0.686094
Target:  5'- cCGUCUCGcuGCGcGcCGaAGCCg-GCGGCCu -3'
miRNA:   3'- -GCAGAGC--CGC-C-GCaUCGGgaCGUCGG- -5'
23588 3' -60.8 NC_005261.1 + 130486 0.7 0.454182
Target:  5'- uGcCUCGGCGGCGagGGCCCcgacgacGUGGCg -3'
miRNA:   3'- gCaGAGCCGCCGCa-UCGGGa------CGUCGg -5'
23588 3' -60.8 NC_005261.1 + 128909 0.69 0.518885
Target:  5'- uCGUCggCGGCGGgGcGGUCCUGgGGgCu -3'
miRNA:   3'- -GCAGa-GCCGCCgCaUCGGGACgUCgG- -5'
23588 3' -60.8 NC_005261.1 + 128791 0.66 0.695907
Target:  5'- uGUCUgGGCgcccgggcccgcGGCGgGGCUcgcgCUGCGGCUg -3'
miRNA:   3'- gCAGAgCCG------------CCGCaUCGG----GACGUCGG- -5'
23588 3' -60.8 NC_005261.1 + 128494 0.7 0.441765
Target:  5'- uCGUCguggagcucgacgCGGCGGCGgaggcAGCCUccugGCGGCUg -3'
miRNA:   3'- -GCAGa------------GCCGCCGCa----UCGGGa---CGUCGG- -5'
23588 3' -60.8 NC_005261.1 + 128013 0.67 0.596815
Target:  5'- cCGcCUgGGCaGGCGcgGGCCCUgggagcacGCGGUCg -3'
miRNA:   3'- -GCaGAgCCG-CCGCa-UCGGGA--------CGUCGG- -5'
23588 3' -60.8 NC_005261.1 + 127806 0.69 0.52748
Target:  5'- gCGcCgCGGCGGCG-GGCCgCUcgcgcucGCGGCCg -3'
miRNA:   3'- -GCaGaGCCGCCGCaUCGG-GA-------CGUCGG- -5'
23588 3' -60.8 NC_005261.1 + 127737 0.68 0.567242
Target:  5'- gCGggagCUUGGCGGCGggagcgGGCCgCgGCGGgCg -3'
miRNA:   3'- -GCa---GAGCCGCCGCa-----UCGG-GaCGUCgG- -5'
23588 3' -60.8 NC_005261.1 + 127675 0.69 0.528438
Target:  5'- gCGggaCGGCGGCGgccgcuGCCCcgGCGGCg -3'
miRNA:   3'- -GCagaGCCGCCGCau----CGGGa-CGUCGg -5'
23588 3' -60.8 NC_005261.1 + 127507 0.68 0.545792
Target:  5'- -----aGGCGGCGgaggaagaggggGGCCCggagGCGGCCc -3'
miRNA:   3'- gcagagCCGCCGCa-----------UCGGGa---CGUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.