miRNA display CGI


Results 1 - 20 of 338 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23588 3' -60.8 NC_005261.1 + 92168 0.66 0.706643
Target:  5'- gCG-CUCGGUGGagccgccgGGCCCgacgccgccgcuggcGCAGCCg -3'
miRNA:   3'- -GCaGAGCCGCCgca-----UCGGGa--------------CGUCGG- -5'
23588 3' -60.8 NC_005261.1 + 35908 0.66 0.686094
Target:  5'- cCGcCgCGGCaGCGcGGCCCcgcgccGCAGCCc -3'
miRNA:   3'- -GCaGaGCCGcCGCaUCGGGa-----CGUCGG- -5'
23588 3' -60.8 NC_005261.1 + 106858 0.66 0.686094
Target:  5'- cCGcCUgGGgGGCGggcGUCC-GCGGCCu -3'
miRNA:   3'- -GCaGAgCCgCCGCau-CGGGaCGUCGG- -5'
23588 3' -60.8 NC_005261.1 + 107177 1.12 0.000629
Target:  5'- cCGUCUCGGCGGCGUAGCCCUGCAGCCg -3'
miRNA:   3'- -GCAGAGCCGCCGCAUCGGGACGUCGG- -5'
23588 3' -60.8 NC_005261.1 + 35550 0.66 0.70567
Target:  5'- aCGg--UGGCGGCGgcGgCa-GCAGCCg -3'
miRNA:   3'- -GCagaGCCGCCGCauCgGgaCGUCGG- -5'
23588 3' -60.8 NC_005261.1 + 103925 0.66 0.70567
Target:  5'- gGUCggGcGCGGCGUcuGCCagacgCUGCAGCg -3'
miRNA:   3'- gCAGagC-CGCCGCAu-CGG-----GACGUCGg -5'
23588 3' -60.8 NC_005261.1 + 109121 0.66 0.704696
Target:  5'- aGgg-CGGCGGUGUcgugcgcGGCCCcagGCAGgCg -3'
miRNA:   3'- gCagaGCCGCCGCA-------UCGGGa--CGUCgG- -5'
23588 3' -60.8 NC_005261.1 + 57506 0.66 0.702747
Target:  5'- aCGUCcCGGCGGCG-GGCCUucUuccacaggcacggcGCGGCg -3'
miRNA:   3'- -GCAGaGCCGCCGCaUCGGG--A--------------CGUCGg -5'
23588 3' -60.8 NC_005261.1 + 29295 0.66 0.695907
Target:  5'- -cUC-CGGCgaGGCcUGGCCCgGCAGCg -3'
miRNA:   3'- gcAGaGCCG--CCGcAUCGGGaCGUCGg -5'
23588 3' -60.8 NC_005261.1 + 37872 0.66 0.695907
Target:  5'- aCGcCU-GGCGGCGcgugcuggAGCCCgaGCuGGCCa -3'
miRNA:   3'- -GCaGAgCCGCCGCa-------UCGGGa-CG-UCGG- -5'
23588 3' -60.8 NC_005261.1 + 101574 0.66 0.695907
Target:  5'- gCG-CUCGGCGcGCGccgUGGCCUccgcGCGcGCCg -3'
miRNA:   3'- -GCaGAGCCGC-CGC---AUCGGGa---CGU-CGG- -5'
23588 3' -60.8 NC_005261.1 + 59270 0.66 0.695907
Target:  5'- gCGUCgcaCGGCGuGuCGccGCCCaGCAGCg -3'
miRNA:   3'- -GCAGa--GCCGC-C-GCauCGGGaCGUCGg -5'
23588 3' -60.8 NC_005261.1 + 123686 0.66 0.70567
Target:  5'- aCGUCcCGGCGcucaGCGUGGgCCgcguacuCGGCCa -3'
miRNA:   3'- -GCAGaGCCGC----CGCAUCgGGac-----GUCGG- -5'
23588 3' -60.8 NC_005261.1 + 97220 0.66 0.695907
Target:  5'- aCG-CUCGGaGGCGcUGGCgCCgGCccGGCCg -3'
miRNA:   3'- -GCaGAGCCgCCGC-AUCG-GGaCG--UCGG- -5'
23588 3' -60.8 NC_005261.1 + 77378 0.66 0.70567
Target:  5'- gCGUCUC--CGGCGcaccCCCUGCcGGCCg -3'
miRNA:   3'- -GCAGAGccGCCGCauc-GGGACG-UCGG- -5'
23588 3' -60.8 NC_005261.1 + 93836 0.66 0.695907
Target:  5'- cCGcCg-GGCGGCGccGCCgaGCAGUCc -3'
miRNA:   3'- -GCaGagCCGCCGCauCGGgaCGUCGG- -5'
23588 3' -60.8 NC_005261.1 + 97142 0.66 0.695907
Target:  5'- aCG-CUCGGaGGCGcUGGCgCCgGCccGGCCg -3'
miRNA:   3'- -GCaGAGCCgCCGC-AUCG-GGaCG--UCGG- -5'
23588 3' -60.8 NC_005261.1 + 28178 0.66 0.686094
Target:  5'- cCGUCUCGcuGCGcGcCGaAGCCg-GCGGCCu -3'
miRNA:   3'- -GCAGAGC--CGC-C-GCaUCGGgaCGUCGG- -5'
23588 3' -60.8 NC_005261.1 + 48328 0.66 0.70567
Target:  5'- cCGggCUCGggggcgcgcGCGGCGaGGCCgaGgAGCCg -3'
miRNA:   3'- -GCa-GAGC---------CGCCGCaUCGGgaCgUCGG- -5'
23588 3' -60.8 NC_005261.1 + 136900 0.66 0.70567
Target:  5'- uGUaCUgGcGUGGUGUGGgCCgcGCGGCCg -3'
miRNA:   3'- gCA-GAgC-CGCCGCAUCgGGa-CGUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.