miRNA display CGI


Results 1 - 20 of 355 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23616 5' -59.5 NC_005261.1 + 138217 0.67 0.671574
Target:  5'- gGCGgaCGGCggCUCGgCCGCCgCGCGg -3'
miRNA:   3'- gCGC--GUCGuaGAGCaGGCGGaGCGCg -5'
23616 5' -59.5 NC_005261.1 + 136632 0.66 0.768081
Target:  5'- aGgGCGGCGggaaggcCUgGUCCGCCUgGaGCu -3'
miRNA:   3'- gCgCGUCGUa------GAgCAGGCGGAgCgCG- -5'
23616 5' -59.5 NC_005261.1 + 135135 0.67 0.681501
Target:  5'- aGCGCGGCGggggagaCGacgCCGCCUC-CGCc -3'
miRNA:   3'- gCGCGUCGUaga----GCa--GGCGGAGcGCG- -5'
23616 5' -59.5 NC_005261.1 + 134075 0.72 0.403809
Target:  5'- uCGCGCGGCucaugugcgagcUCUCGgCgCGCCggCGCGCg -3'
miRNA:   3'- -GCGCGUCGu-----------AGAGCaG-GCGGa-GCGCG- -5'
23616 5' -59.5 NC_005261.1 + 133832 0.68 0.641642
Target:  5'- uGCGCGGCcgCgugCGcgCCgugGCCggCGCGCg -3'
miRNA:   3'- gCGCGUCGuaGa--GCa-GG---CGGa-GCGCG- -5'
23616 5' -59.5 NC_005261.1 + 133653 0.66 0.74943
Target:  5'- uGCGCgAGCG-CUgCGUgcUCGCCUCcgGCGCc -3'
miRNA:   3'- gCGCG-UCGUaGA-GCA--GGCGGAG--CGCG- -5'
23616 5' -59.5 NC_005261.1 + 133590 0.66 0.739952
Target:  5'- cCGCGCuGGCGcugCUCacgGcCCaCCUCGCGCu -3'
miRNA:   3'- -GCGCG-UCGUa--GAG---CaGGcGGAGCGCG- -5'
23616 5' -59.5 NC_005261.1 + 133361 0.74 0.299091
Target:  5'- cCGCGCAGgGcUUCGgCUGCCUgCGCGCg -3'
miRNA:   3'- -GCGCGUCgUaGAGCaGGCGGA-GCGCG- -5'
23616 5' -59.5 NC_005261.1 + 133325 0.66 0.758809
Target:  5'- uCGCGCAGC-UCcUG-CCGgCaCGCGCg -3'
miRNA:   3'- -GCGCGUCGuAGaGCaGGCgGaGCGCG- -5'
23616 5' -59.5 NC_005261.1 + 133267 0.67 0.720736
Target:  5'- gCGCGCgaguaccagGGCGcCggCGcCCGCCUCGUGg -3'
miRNA:   3'- -GCGCG---------UCGUaGa-GCaGGCGGAGCGCg -5'
23616 5' -59.5 NC_005261.1 + 133145 0.69 0.55222
Target:  5'- uGCGguGCGcgCUCG-CCGCCgUCgGCGUc -3'
miRNA:   3'- gCGCguCGUa-GAGCaGGCGG-AG-CGCG- -5'
23616 5' -59.5 NC_005261.1 + 132477 0.66 0.758809
Target:  5'- cCG-GCAGCGcCUCG-CCGuCCUgggaCGCGCc -3'
miRNA:   3'- -GCgCGUCGUaGAGCaGGC-GGA----GCGCG- -5'
23616 5' -59.5 NC_005261.1 + 132449 0.7 0.513564
Target:  5'- aGCGCGuGCccCUCGgCCGCCcucCGCGCc -3'
miRNA:   3'- gCGCGU-CGuaGAGCaGGCGGa--GCGCG- -5'
23616 5' -59.5 NC_005261.1 + 132361 0.74 0.319945
Target:  5'- cCGcCGCGGCGcgCUCG-CCGCgCUCGCGg -3'
miRNA:   3'- -GC-GCGUCGUa-GAGCaGGCG-GAGCGCg -5'
23616 5' -59.5 NC_005261.1 + 131693 0.75 0.279304
Target:  5'- gCGCGCGGCG-CUgGaCCGCCUCGagaGCc -3'
miRNA:   3'- -GCGCGUCGUaGAgCaGGCGGAGCg--CG- -5'
23616 5' -59.5 NC_005261.1 + 131450 0.66 0.74943
Target:  5'- uGCGCcGCGcCUCGcgggcgccucCCGCCUC-CGCg -3'
miRNA:   3'- gCGCGuCGUaGAGCa---------GGCGGAGcGCG- -5'
23616 5' -59.5 NC_005261.1 + 131191 0.68 0.661617
Target:  5'- aCGCccGCGGCGcggUCG-CCGCCggCGCGCc -3'
miRNA:   3'- -GCG--CGUCGUag-AGCaGGCGGa-GCGCG- -5'
23616 5' -59.5 NC_005261.1 + 130661 0.67 0.681501
Target:  5'- aCGCGCuGCucCUCGgcgagcccCUGCC-CGCGCg -3'
miRNA:   3'- -GCGCGuCGuaGAGCa-------GGCGGaGCGCG- -5'
23616 5' -59.5 NC_005261.1 + 130248 0.67 0.691389
Target:  5'- cCGCGcCAGCggCUCGUacugcggggCGUCcCGCGCg -3'
miRNA:   3'- -GCGC-GUCGuaGAGCAg--------GCGGaGCGCG- -5'
23616 5' -59.5 NC_005261.1 + 130104 0.68 0.661617
Target:  5'- cCGCGcCAGCGacugcgcCUUGgcgagCCGCCgCGCGCc -3'
miRNA:   3'- -GCGC-GUCGUa------GAGCa----GGCGGaGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.