miRNA display CGI


Results 1 - 20 of 247 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23625 3' -65.7 NC_005261.1 + 48847 0.66 0.454033
Target:  5'- cCGCCGCGCaGCaggCCCaGCGCCcGGGc- -3'
miRNA:   3'- -GCGGUGCG-CGg--GGGgCGCGGaUCCuu -5'
23625 3' -65.7 NC_005261.1 + 33834 0.66 0.454033
Target:  5'- gGgCGCGgGCCCCCUGgCGCUgggcgggccGGGAGg -3'
miRNA:   3'- gCgGUGCgCGGGGGGC-GCGGa--------UCCUU- -5'
23625 3' -65.7 NC_005261.1 + 54255 0.66 0.454033
Target:  5'- uGCaGCGCGCCCUggcgCCGCGCacacuGGAc -3'
miRNA:   3'- gCGgUGCGCGGGG----GGCGCGgau--CCUu -5'
23625 3' -65.7 NC_005261.1 + 60854 0.66 0.454033
Target:  5'- gGUCGCGCGCCgggccgagCCCGCGCCg----- -3'
miRNA:   3'- gCGGUGCGCGGg-------GGGCGCGGauccuu -5'
23625 3' -65.7 NC_005261.1 + 66373 0.66 0.454033
Target:  5'- gCGCCcCgGCGCCCCCuCGCuCUUguucAGGAAg -3'
miRNA:   3'- -GCGGuG-CGCGGGGG-GCGcGGA----UCCUU- -5'
23625 3' -65.7 NC_005261.1 + 106898 0.66 0.454033
Target:  5'- gCGCC-UGCGUCgUCCGCGCCgcGGc- -3'
miRNA:   3'- -GCGGuGCGCGGgGGGCGCGGauCCuu -5'
23625 3' -65.7 NC_005261.1 + 35908 0.66 0.454033
Target:  5'- cCGCCGCggcaGCGCggCCCCGCGCCg----- -3'
miRNA:   3'- -GCGGUG----CGCGg-GGGGCGCGGauccuu -5'
23625 3' -65.7 NC_005261.1 + 50091 0.66 0.445324
Target:  5'- uGaCCACGUgcacGCUgCCCGCGCCgcgcAGGGc -3'
miRNA:   3'- gC-GGUGCG----CGGgGGGCGCGGa---UCCUu -5'
23625 3' -65.7 NC_005261.1 + 121 0.66 0.445324
Target:  5'- gCGCCgGCGcCGCCCCUgGUGCUcgcGGGGc -3'
miRNA:   3'- -GCGG-UGC-GCGGGGGgCGCGGa--UCCUu -5'
23625 3' -65.7 NC_005261.1 + 62845 0.66 0.445324
Target:  5'- gGaCugGCGCgCCCCGCGCCa----- -3'
miRNA:   3'- gCgGugCGCGgGGGGCGCGGauccuu -5'
23625 3' -65.7 NC_005261.1 + 114998 0.66 0.445324
Target:  5'- gGCCGcCGCGgCCCCgGCcCCgcGGAGg -3'
miRNA:   3'- gCGGU-GCGCgGGGGgCGcGGauCCUU- -5'
23625 3' -65.7 NC_005261.1 + 126548 0.66 0.445324
Target:  5'- nGCCACGCGCCgCCgUCGCGCg------ -3'
miRNA:   3'- gCGGUGCGCGG-GG-GGCGCGgauccuu -5'
23625 3' -65.7 NC_005261.1 + 137804 0.66 0.445324
Target:  5'- gCGCCgGCGcCGCCCCUgGUGCUcgcGGGGc -3'
miRNA:   3'- -GCGG-UGC-GCGGGGGgCGCGGa--UCCUu -5'
23625 3' -65.7 NC_005261.1 + 32523 0.66 0.445324
Target:  5'- gCGCCGCGCccggccccgGCCCCggCCGCGgCgcGGGc -3'
miRNA:   3'- -GCGGUGCG---------CGGGG--GGCGCgGauCCUu -5'
23625 3' -65.7 NC_005261.1 + 39487 0.66 0.445324
Target:  5'- cCGCCGCGgacgaugauCGCCCCUCGC-CCgaagAGGc- -3'
miRNA:   3'- -GCGGUGC---------GCGGGGGGCGcGGa---UCCuu -5'
23625 3' -65.7 NC_005261.1 + 58492 0.66 0.445324
Target:  5'- cCGgCGCGCGgCCgcuuuuggcgCCCGCGUCcAGGAGg -3'
miRNA:   3'- -GCgGUGCGCgGG----------GGGCGCGGaUCCUU- -5'
23625 3' -65.7 NC_005261.1 + 74974 0.66 0.445324
Target:  5'- gGCCGCGCGCCC---GCGCC-GGGu- -3'
miRNA:   3'- gCGGUGCGCGGGgggCGCGGaUCCuu -5'
23625 3' -65.7 NC_005261.1 + 137691 0.66 0.445324
Target:  5'- cCGCCccucgugcaGCGgGCCCCgCGCGaCCccgGGGGGu -3'
miRNA:   3'- -GCGG---------UGCgCGGGGgGCGC-GGa--UCCUU- -5'
23625 3' -65.7 NC_005261.1 + 30557 0.66 0.445324
Target:  5'- gGCCGC-CGCCgCCgGgGCCUcGGAc -3'
miRNA:   3'- gCGGUGcGCGGgGGgCgCGGAuCCUu -5'
23625 3' -65.7 NC_005261.1 + 2659 0.66 0.445324
Target:  5'- aGCgGCG-GCuCCCgCCGCGCUgGGGAc -3'
miRNA:   3'- gCGgUGCgCG-GGG-GGCGCGGaUCCUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.