miRNA display CGI


Results 1 - 20 of 649 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23638 3' -62.7 NC_005261.1 + 112827 0.66 0.633234
Target:  5'- gACGGGCuccaaccucuGCACGgagaUCGUGCaGCGCgCGGa -3'
miRNA:   3'- -UGCCCG----------UGUGC----AGCGUG-CGCGgGCCg -5'
23638 3' -62.7 NC_005261.1 + 57787 0.66 0.633234
Target:  5'- cGCGGcGuCGCGCGgCGgGCGCGCgaaGGCc -3'
miRNA:   3'- -UGCC-C-GUGUGCaGCgUGCGCGgg-CCG- -5'
23638 3' -62.7 NC_005261.1 + 24041 0.66 0.633234
Target:  5'- uCGGGUGgGCGUCcuuggguggGCGCcCGCCCGaGUg -3'
miRNA:   3'- uGCCCGUgUGCAG---------CGUGcGCGGGC-CG- -5'
23638 3' -62.7 NC_005261.1 + 57968 0.66 0.633234
Target:  5'- cGCcGGCgACGCaggCGCGCGCGgCCGcGCc -3'
miRNA:   3'- -UGcCCG-UGUGca-GCGUGCGCgGGC-CG- -5'
23638 3' -62.7 NC_005261.1 + 105002 0.66 0.633234
Target:  5'- cGCGGGCgGCG-GUCGgG-GCGCCagGGCg -3'
miRNA:   3'- -UGCCCG-UGUgCAGCgUgCGCGGg-CCG- -5'
23638 3' -62.7 NC_005261.1 + 108710 0.66 0.633234
Target:  5'- gACGaGCGcCACGgcgaagagCGCGCGgGCCagCGGCg -3'
miRNA:   3'- -UGCcCGU-GUGCa-------GCGUGCgCGG--GCCG- -5'
23638 3' -62.7 NC_005261.1 + 130267 0.66 0.633234
Target:  5'- uGCGGG---GCGUCcCGCGCGCCCccGCc -3'
miRNA:   3'- -UGCCCgugUGCAGcGUGCGCGGGc-CG- -5'
23638 3' -62.7 NC_005261.1 + 123498 0.66 0.633234
Target:  5'- cCGGGCGCaccaGCGgcagUGC-CGCGUCCGcuaGCa -3'
miRNA:   3'- uGCCCGUG----UGCa---GCGuGCGCGGGC---CG- -5'
23638 3' -62.7 NC_005261.1 + 30038 0.66 0.633234
Target:  5'- aGCGGGC-CGCGgccUGC-CG-GCCgCGGCc -3'
miRNA:   3'- -UGCCCGuGUGCa--GCGuGCgCGG-GCCG- -5'
23638 3' -62.7 NC_005261.1 + 115483 0.66 0.633234
Target:  5'- cGCGGGCucggcCGCGgcggCGCGcCGCaGCCCccGCa -3'
miRNA:   3'- -UGCCCGu----GUGCa---GCGU-GCG-CGGGc-CG- -5'
23638 3' -62.7 NC_005261.1 + 38176 0.66 0.623454
Target:  5'- cACGGcuGC-CugGagGCcuggGCGCGCCgCGGCg -3'
miRNA:   3'- -UGCC--CGuGugCagCG----UGCGCGG-GCCG- -5'
23638 3' -62.7 NC_005261.1 + 11470 0.66 0.623454
Target:  5'- aGCGGGCGCggagggGCGggGCGgGgGUgCCGGCu -3'
miRNA:   3'- -UGCCCGUG------UGCagCGUgCgCG-GGCCG- -5'
23638 3' -62.7 NC_005261.1 + 14455 0.66 0.623454
Target:  5'- -gGGGCGCGCGgcggaGCuCGCGCUgguccuccaacgCGGUg -3'
miRNA:   3'- ugCCCGUGUGCag---CGuGCGCGG------------GCCG- -5'
23638 3' -62.7 NC_005261.1 + 13413 0.66 0.623454
Target:  5'- -aGGGCgACGCGaaggCGCAcCGCGCgucgaCCGGg -3'
miRNA:   3'- ugCCCG-UGUGCa---GCGU-GCGCG-----GGCCg -5'
23638 3' -62.7 NC_005261.1 + 53235 0.66 0.623454
Target:  5'- gAUGcGGCGCcaGC-UCGCcccGCGCGuCCCGGUc -3'
miRNA:   3'- -UGC-CCGUG--UGcAGCG---UGCGC-GGGCCG- -5'
23638 3' -62.7 NC_005261.1 + 39213 0.66 0.623454
Target:  5'- cCGGuaGC-CGccauggcccUCGCGCGCGCC-GGCg -3'
miRNA:   3'- uGCCcgUGuGC---------AGCGUGCGCGGgCCG- -5'
23638 3' -62.7 NC_005261.1 + 84695 0.66 0.623454
Target:  5'- aGCcGGCGCGCGg-GCACGCGagcacaaagCGGCg -3'
miRNA:   3'- -UGcCCGUGUGCagCGUGCGCgg-------GCCG- -5'
23638 3' -62.7 NC_005261.1 + 102171 0.66 0.623454
Target:  5'- aGCGgcGGCgGCACGUCGaucCGCGCGUUCucgGGCg -3'
miRNA:   3'- -UGC--CCG-UGUGCAGC---GUGCGCGGG---CCG- -5'
23638 3' -62.7 NC_005261.1 + 58490 0.66 0.623454
Target:  5'- gGCcGGCGCGCGgccgcuuuuggCGCcCGCGUCCaggaGGCg -3'
miRNA:   3'- -UGcCCGUGUGCa----------GCGuGCGCGGG----CCG- -5'
23638 3' -62.7 NC_005261.1 + 134372 0.66 0.623454
Target:  5'- -gGGGCG-GCGcCGCugGCGa-CGGCg -3'
miRNA:   3'- ugCCCGUgUGCaGCGugCGCggGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.