miRNA display CGI


Results 1 - 20 of 350 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23647 5' -55.9 NC_005261.1 + 93732 0.66 0.919887
Target:  5'- -gCGGCgGCAgcGCGCGCUUCguaCUCGgCg -3'
miRNA:   3'- gaGCUG-CGUauUGCGCGGAG---GAGCgG- -5'
23647 5' -55.9 NC_005261.1 + 115840 0.66 0.919887
Target:  5'- uUgGGCGCGUuggcccGCGCgGCC-CC-CGCCg -3'
miRNA:   3'- gAgCUGCGUAu-----UGCG-CGGaGGaGCGG- -5'
23647 5' -55.9 NC_005261.1 + 20855 0.66 0.919887
Target:  5'- -gCGugGCGgcucuUGCGCCgcgggccggCCaUCGCCa -3'
miRNA:   3'- gaGCugCGUauu--GCGCGGa--------GG-AGCGG- -5'
23647 5' -55.9 NC_005261.1 + 73725 0.66 0.919887
Target:  5'- gUCGGCGU---GCGCGCUugcgcgcgggggUCCggUGCCa -3'
miRNA:   3'- gAGCUGCGuauUGCGCGG------------AGGa-GCGG- -5'
23647 5' -55.9 NC_005261.1 + 124849 0.66 0.919887
Target:  5'- cCUCG-CGCAggucuGCG-GCgUCgUCGCCu -3'
miRNA:   3'- -GAGCuGCGUau---UGCgCGgAGgAGCGG- -5'
23647 5' -55.9 NC_005261.1 + 52337 0.66 0.919887
Target:  5'- cCUUGGCGCccgcCGCGCUgccgCCggaGCCg -3'
miRNA:   3'- -GAGCUGCGuauuGCGCGGa---GGag-CGG- -5'
23647 5' -55.9 NC_005261.1 + 115357 0.66 0.919887
Target:  5'- -gCGcACGCug--UGCGCCUCCacggUUGCCg -3'
miRNA:   3'- gaGC-UGCGuauuGCGCGGAGG----AGCGG- -5'
23647 5' -55.9 NC_005261.1 + 104276 0.66 0.919887
Target:  5'- uCUCGGCgGCugcGCGgGCCUCgCagGCCc -3'
miRNA:   3'- -GAGCUG-CGuauUGCgCGGAG-GagCGG- -5'
23647 5' -55.9 NC_005261.1 + 623 0.66 0.914153
Target:  5'- -cCGACGCAggggaUGugGCGgCggCCgccagCGCCg -3'
miRNA:   3'- gaGCUGCGU-----AUugCGCgGa-GGa----GCGG- -5'
23647 5' -55.9 NC_005261.1 + 70539 0.66 0.914153
Target:  5'- -gCGGCGCc---CGCGCCccaCC-CGCCg -3'
miRNA:   3'- gaGCUGCGuauuGCGCGGa--GGaGCGG- -5'
23647 5' -55.9 NC_005261.1 + 56298 0.66 0.914153
Target:  5'- uUCGcCGCc--ACG-GCCUCC-CGCCu -3'
miRNA:   3'- gAGCuGCGuauUGCgCGGAGGaGCGG- -5'
23647 5' -55.9 NC_005261.1 + 95043 0.66 0.914153
Target:  5'- gCUCGGCGCcgcaGAC-CGCC-CUcCGCCa -3'
miRNA:   3'- -GAGCUGCGua--UUGcGCGGaGGaGCGG- -5'
23647 5' -55.9 NC_005261.1 + 93798 0.66 0.914153
Target:  5'- --gGACGC----CGCGCCgCCgcgCGCCg -3'
miRNA:   3'- gagCUGCGuauuGCGCGGaGGa--GCGG- -5'
23647 5' -55.9 NC_005261.1 + 54239 0.66 0.914153
Target:  5'- -gCGGCGCGcgcucaugugcAGCGCGCC-CUggCGCCg -3'
miRNA:   3'- gaGCUGCGUa----------UUGCGCGGaGGa-GCGG- -5'
23647 5' -55.9 NC_005261.1 + 111351 0.66 0.914153
Target:  5'- -cCGGCGCcgAccGCGCGUCUgCU-GCCc -3'
miRNA:   3'- gaGCUGCGuaU--UGCGCGGAgGAgCGG- -5'
23647 5' -55.9 NC_005261.1 + 120366 0.66 0.914153
Target:  5'- -aCGGUGCGcGACgGCGCCgcgcCCUCGCg -3'
miRNA:   3'- gaGCUGCGUaUUG-CGCGGa---GGAGCGg -5'
23647 5' -55.9 NC_005261.1 + 103209 0.66 0.914153
Target:  5'- -gCGGCGCcuccugcaggaAgcGCGCGCagUCCUcCGCCg -3'
miRNA:   3'- gaGCUGCG-----------UauUGCGCGg-AGGA-GCGG- -5'
23647 5' -55.9 NC_005261.1 + 105300 0.66 0.914153
Target:  5'- --gGGCGCGcgAGCGCGgggUCCUCGCa -3'
miRNA:   3'- gagCUGCGUa-UUGCGCgg-AGGAGCGg -5'
23647 5' -55.9 NC_005261.1 + 101997 0.66 0.914153
Target:  5'- -aCGGCGuCGUaGugGCGCag-CUCGCCg -3'
miRNA:   3'- gaGCUGC-GUA-UugCGCGgagGAGCGG- -5'
23647 5' -55.9 NC_005261.1 + 1311 0.66 0.914153
Target:  5'- -cCGGCgGCGgcACGCG-CUCCgggaCGCCg -3'
miRNA:   3'- gaGCUG-CGUauUGCGCgGAGGa---GCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.