miRNA display CGI


Results 1 - 20 of 185 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23651 5' -57.8 NC_005261.1 + 46094 0.66 0.82201
Target:  5'- -aCGAGCacguacGGCCgggGGCCGuGGUCCGCg -3'
miRNA:   3'- caGCUUGaa----CCGG---UCGGUcUCGGGCG- -5'
23651 5' -57.8 NC_005261.1 + 64757 0.66 0.82201
Target:  5'- --gGAAgUUGGCCucGGCC--AGCUCGCg -3'
miRNA:   3'- cagCUUgAACCGG--UCGGucUCGGGCG- -5'
23651 5' -57.8 NC_005261.1 + 36654 0.66 0.82201
Target:  5'- -gCGGGCUUGG--GGCCAGGGUCgaaCGCu -3'
miRNA:   3'- caGCUUGAACCggUCGGUCUCGG---GCG- -5'
23651 5' -57.8 NC_005261.1 + 60082 0.66 0.813371
Target:  5'- -gCGGGCUgcgugGGCagcagcacgcUGGCCAGcgcGCCCGCg -3'
miRNA:   3'- caGCUUGAa----CCG----------GUCGGUCu--CGGGCG- -5'
23651 5' -57.8 NC_005261.1 + 72989 0.66 0.813371
Target:  5'- -gCGAGCgcGGCCAGCgc--GUCCGCg -3'
miRNA:   3'- caGCUUGaaCCGGUCGgucuCGGGCG- -5'
23651 5' -57.8 NC_005261.1 + 49074 0.66 0.813371
Target:  5'- -gCGAAgcgGGCaCGcGCCGcGGGCCCGCu -3'
miRNA:   3'- caGCUUgaaCCG-GU-CGGU-CUCGGGCG- -5'
23651 5' -57.8 NC_005261.1 + 38901 0.66 0.813371
Target:  5'- cGUCGucCUUcuCCGGCgCGcGGGCCCGCg -3'
miRNA:   3'- -CAGCuuGAAccGGUCG-GU-CUCGGGCG- -5'
23651 5' -57.8 NC_005261.1 + 19029 0.66 0.813371
Target:  5'- cGUCGcg---GGgCAGCCGGAGagCCGCc -3'
miRNA:   3'- -CAGCuugaaCCgGUCGGUCUCg-GGCG- -5'
23651 5' -57.8 NC_005261.1 + 83861 0.66 0.813371
Target:  5'- -cUGGGCUgGGCCgGGCCGGAcGCCgGg -3'
miRNA:   3'- caGCUUGAaCCGG-UCGGUCU-CGGgCg -5'
23651 5' -57.8 NC_005261.1 + 111797 0.66 0.813371
Target:  5'- -cUGGACgccUGGCUcgcgucGGCC-GAGCUCGCg -3'
miRNA:   3'- caGCUUGa--ACCGG------UCGGuCUCGGGCG- -5'
23651 5' -57.8 NC_005261.1 + 118166 0.66 0.813371
Target:  5'- cGUCGcGGCggGGCUugccgucugGGCCGcGGGCcCCGCg -3'
miRNA:   3'- -CAGC-UUGaaCCGG---------UCGGU-CUCG-GGCG- -5'
23651 5' -57.8 NC_005261.1 + 119978 0.66 0.804567
Target:  5'- cGUCGAGCcccGGCCGacGCUGGAgggcGCCgGCu -3'
miRNA:   3'- -CAGCUUGaa-CCGGU--CGGUCU----CGGgCG- -5'
23651 5' -57.8 NC_005261.1 + 42104 0.66 0.804567
Target:  5'- -gUGAGgaUGuGCCGGcCCAGcAGCCCGg -3'
miRNA:   3'- caGCUUgaAC-CGGUC-GGUC-UCGGGCg -5'
23651 5' -57.8 NC_005261.1 + 93620 0.66 0.804567
Target:  5'- gGUCGcGACgccGGCCAGCagCAGcagcgcgaGGUCCGCg -3'
miRNA:   3'- -CAGC-UUGaa-CCGGUCG--GUC--------UCGGGCG- -5'
23651 5' -57.8 NC_005261.1 + 87626 0.66 0.804567
Target:  5'- cGUUGGGCgcgaacGCC-GCCuccacgguGAGCCCGCg -3'
miRNA:   3'- -CAGCUUGaac---CGGuCGGu-------CUCGGGCG- -5'
23651 5' -57.8 NC_005261.1 + 20494 0.66 0.804567
Target:  5'- -cCGAGCgcugacagcgGGCCGGCUAGGGaCgCCGg -3'
miRNA:   3'- caGCUUGaa--------CCGGUCGGUCUC-G-GGCg -5'
23651 5' -57.8 NC_005261.1 + 72824 0.66 0.804567
Target:  5'- cUCGAgggccGCaaggcGGUCGGCCAGGGCgCCaGCg -3'
miRNA:   3'- cAGCU-----UGaa---CCGGUCGGUCUCG-GG-CG- -5'
23651 5' -57.8 NC_005261.1 + 2992 0.66 0.795607
Target:  5'- cUCGGcCUggcGGCCcggcGCCGGGGCucCCGCg -3'
miRNA:   3'- cAGCUuGAa--CCGGu---CGGUCUCG--GGCG- -5'
23651 5' -57.8 NC_005261.1 + 84877 0.66 0.795607
Target:  5'- -cCGAGCgcacgaggUGGCUGGCggcgaaGGuGCCCGCc -3'
miRNA:   3'- caGCUUGa-------ACCGGUCGg-----UCuCGGGCG- -5'
23651 5' -57.8 NC_005261.1 + 83560 0.66 0.795607
Target:  5'- --aGAACUcggcgGGCguGCCcgcGGcGCCCGCg -3'
miRNA:   3'- cagCUUGAa----CCGguCGG---UCuCGGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.