miRNA display CGI


Results 1 - 20 of 358 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23658 5' -58.1 NC_005261.1 + 59571 0.66 0.854401
Target:  5'- cGCGCGcGCGCCGc-AGCGGguGCCGc-- -3'
miRNA:   3'- -CGCGCuUGCGGCcuUCGCU--CGGCacc -5'
23658 5' -58.1 NC_005261.1 + 230 0.66 0.854401
Target:  5'- uCGCGGGCcCCGcGAGCGGGCCc-GGc -3'
miRNA:   3'- cGCGCUUGcGGCcUUCGCUCGGcaCC- -5'
23658 5' -58.1 NC_005261.1 + 55044 0.66 0.854401
Target:  5'- cGCGCagcuGCGCgGGGccGGCGAGCuCGg-- -3'
miRNA:   3'- -CGCGcu--UGCGgCCU--UCGCUCG-GCacc -5'
23658 5' -58.1 NC_005261.1 + 116489 0.66 0.854401
Target:  5'- gGgGCGGGCGCgCGGuauaaaGAGCGccGCCGcGGc -3'
miRNA:   3'- -CgCGCUUGCG-GCC------UUCGCu-CGGCaCC- -5'
23658 5' -58.1 NC_005261.1 + 32012 0.66 0.854401
Target:  5'- cGCGCGAGuaCCGGcAGCGcgugcuGCCGcGGc -3'
miRNA:   3'- -CGCGCUUgcGGCCuUCGCu-----CGGCaCC- -5'
23658 5' -58.1 NC_005261.1 + 127878 0.66 0.854401
Target:  5'- aGCGgGAgucGCGCCGGcgcccgucGGGCccGGGCC-UGGg -3'
miRNA:   3'- -CGCgCU---UGCGGCC--------UUCG--CUCGGcACC- -5'
23658 5' -58.1 NC_005261.1 + 74349 0.66 0.854401
Target:  5'- gGCGCG-GCGgCGGAAGgGgcGGCCGc-- -3'
miRNA:   3'- -CGCGCuUGCgGCCUUCgC--UCGGCacc -5'
23658 5' -58.1 NC_005261.1 + 137913 0.66 0.854401
Target:  5'- uCGCGGGCcCCGcGAGCGGGCCc-GGc -3'
miRNA:   3'- cGCGCUUGcGGCcUUCGCUCGGcaCC- -5'
23658 5' -58.1 NC_005261.1 + 80061 0.66 0.854401
Target:  5'- gGCgGCGGGCGCgGGggGCGuGggggaCGcGGa -3'
miRNA:   3'- -CG-CGCUUGCGgCCuuCGCuCg----GCaCC- -5'
23658 5' -58.1 NC_005261.1 + 104124 0.66 0.854401
Target:  5'- cGCGCGGuuCGCCGcGAGCucGGCCGccaGGu -3'
miRNA:   3'- -CGCGCUu-GCGGCcUUCGc-UCGGCa--CC- -5'
23658 5' -58.1 NC_005261.1 + 31737 0.66 0.853637
Target:  5'- cGCGCGAugGcCCGGccGuCGGGCaggcgcaCGUGu -3'
miRNA:   3'- -CGCGCUugC-GGCCuuC-GCUCG-------GCACc -5'
23658 5' -58.1 NC_005261.1 + 133058 0.66 0.846682
Target:  5'- uGCGCG-GCGuuGGcGGCGAGUaCGUc- -3'
miRNA:   3'- -CGCGCuUGCggCCuUCGCUCG-GCAcc -5'
23658 5' -58.1 NC_005261.1 + 138195 0.66 0.846682
Target:  5'- gGCGCGGGCggGCgGGggGCaGGGCgGa-- -3'
miRNA:   3'- -CGCGCUUG--CGgCCuuCG-CUCGgCacc -5'
23658 5' -58.1 NC_005261.1 + 23757 0.66 0.846682
Target:  5'- gGgGCGGGCuuGCCccGGGCGGGCCGgcuaGGg -3'
miRNA:   3'- -CgCGCUUG--CGGccUUCGCUCGGCa---CC- -5'
23658 5' -58.1 NC_005261.1 + 23814 0.66 0.846682
Target:  5'- gGgGCGGGCuuGCCccGGGCGGGCCGgcuaGGg -3'
miRNA:   3'- -CgCGCUUG--CGGccUUCGCUCGGCa---CC- -5'
23658 5' -58.1 NC_005261.1 + 524 0.66 0.846682
Target:  5'- gGCGCGGGCggGCgGGggGCaGGGCgGa-- -3'
miRNA:   3'- -CGCGCUUG--CGgCCuuCG-CUCGgCacc -5'
23658 5' -58.1 NC_005261.1 + 23871 0.66 0.846682
Target:  5'- gGgGCGGGCuuGCCccGGGCGGGCCGgcuaGGg -3'
miRNA:   3'- -CgCGCUUG--CGGccUUCGCUCGGCa---CC- -5'
23658 5' -58.1 NC_005261.1 + 97388 0.66 0.846682
Target:  5'- cGCGCGGcuuucGCGCCuGccGCGGGCU-UGGc -3'
miRNA:   3'- -CGCGCU-----UGCGGcCuuCGCUCGGcACC- -5'
23658 5' -58.1 NC_005261.1 + 23333 0.66 0.846682
Target:  5'- cCGaCGAGCGCgCGGcgcAGCGcgcgcgugucGGCCGUGa -3'
miRNA:   3'- cGC-GCUUGCG-GCCu--UCGC----------UCGGCACc -5'
23658 5' -58.1 NC_005261.1 + 14111 0.66 0.846682
Target:  5'- gGCaGaCGGGCGUCGGcu-CGGGCgGUGGg -3'
miRNA:   3'- -CG-C-GCUUGCGGCCuucGCUCGgCACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.