miRNA display CGI


Results 1 - 20 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23659 5' -57 NC_005261.1 + 47965 0.66 0.84029
Target:  5'- -cGCUGCGCgCGAgcacGUCGaccagggcgaacacgGCGUCGCAg -3'
miRNA:   3'- caUGACGCG-GCU----UAGCa--------------CGCGGCGUa -5'
23659 5' -57 NC_005261.1 + 122717 0.66 0.839463
Target:  5'- -gGCcGCGCCGucgauguucacGUCG-GCGCCGCu- -3'
miRNA:   3'- caUGaCGCGGCu----------UAGCaCGCGGCGua -5'
23659 5' -57 NC_005261.1 + 124252 0.66 0.839463
Target:  5'- -gGCagGCGCCGcg-CG-GCGCCGCc- -3'
miRNA:   3'- caUGa-CGCGGCuuaGCaCGCGGCGua -5'
23659 5' -57 NC_005261.1 + 76084 0.66 0.839463
Target:  5'- cUGCUGCGCC---UCGUgGCGCUGgAg -3'
miRNA:   3'- cAUGACGCGGcuuAGCA-CGCGGCgUa -5'
23659 5' -57 NC_005261.1 + 109187 0.66 0.839463
Target:  5'- -aGCaGCGCCGcGUCGgGCGUgCGCAg -3'
miRNA:   3'- caUGaCGCGGCuUAGCaCGCG-GCGUa -5'
23659 5' -57 NC_005261.1 + 88607 0.66 0.839463
Target:  5'- -gGCgGCGCCacGGUCGUGaCGCUGCu- -3'
miRNA:   3'- caUGaCGCGGc-UUAGCAC-GCGGCGua -5'
23659 5' -57 NC_005261.1 + 133829 0.66 0.831092
Target:  5'- -cGCUGCGCgGccgCGUgcGCGCCGUg- -3'
miRNA:   3'- caUGACGCGgCuuaGCA--CGCGGCGua -5'
23659 5' -57 NC_005261.1 + 53539 0.66 0.831092
Target:  5'- cGUGUUGCGCUcu-UCGgccGCGCCGCGg -3'
miRNA:   3'- -CAUGACGCGGcuuAGCa--CGCGGCGUa -5'
23659 5' -57 NC_005261.1 + 64283 0.66 0.831092
Target:  5'- gGUGCaGCGCCGcguccagCGUGCGCauguuuCGCGUc -3'
miRNA:   3'- -CAUGaCGCGGCuua----GCACGCG------GCGUA- -5'
23659 5' -57 NC_005261.1 + 6360 0.66 0.831092
Target:  5'- ----cGCGCCGGucCG-GCGCCGCu- -3'
miRNA:   3'- caugaCGCGGCUuaGCaCGCGGCGua -5'
23659 5' -57 NC_005261.1 + 82065 0.66 0.831092
Target:  5'- ----cGuCGCCGggUCGacggcGUGCCGCAg -3'
miRNA:   3'- caugaC-GCGGCuuAGCa----CGCGGCGUa -5'
23659 5' -57 NC_005261.1 + 46976 0.66 0.831092
Target:  5'- -cGCUGCcgccgcccGCCGGcagCGcGCGCCGCGc -3'
miRNA:   3'- caUGACG--------CGGCUua-GCaCGCGGCGUa -5'
23659 5' -57 NC_005261.1 + 36784 0.66 0.831092
Target:  5'- cGUGCguUGCGCCGAGacuuUGCGCCGg-- -3'
miRNA:   3'- -CAUG--ACGCGGCUUagc-ACGCGGCgua -5'
23659 5' -57 NC_005261.1 + 47698 0.66 0.831092
Target:  5'- -cGCgGCGCCGcGUCGgcgGCGUCGgGg -3'
miRNA:   3'- caUGaCGCGGCuUAGCa--CGCGGCgUa -5'
23659 5' -57 NC_005261.1 + 113476 0.66 0.827691
Target:  5'- cUGCUGCGcCCGAAccugccgcugaugCGcGCGCUGCGa -3'
miRNA:   3'- cAUGACGC-GGCUUa------------GCaCGCGGCGUa -5'
23659 5' -57 NC_005261.1 + 29477 0.66 0.822535
Target:  5'- aGUACgcgGCGCUGGuggaccugguGUaCGcGCGCCGCGa -3'
miRNA:   3'- -CAUGa--CGCGGCU----------UA-GCaCGCGGCGUa -5'
23659 5' -57 NC_005261.1 + 59801 0.66 0.822535
Target:  5'- -gGCgGCagGCCGGcgUG-GCGCCGCGUg -3'
miRNA:   3'- caUGaCG--CGGCUuaGCaCGCGGCGUA- -5'
23659 5' -57 NC_005261.1 + 72496 0.66 0.813801
Target:  5'- -aGgaGCGCCGcgcgaagCGgGCGCCGCAUc -3'
miRNA:   3'- caUgaCGCGGCuua----GCaCGCGGCGUA- -5'
23659 5' -57 NC_005261.1 + 120003 0.66 0.813801
Target:  5'- ----gGCGCCGGcuacgcggcCGUGUGCCGCGc -3'
miRNA:   3'- caugaCGCGGCUua-------GCACGCGGCGUa -5'
23659 5' -57 NC_005261.1 + 87432 0.66 0.813801
Target:  5'- -gGCgaagGCGCCGAAgcCGaaGCGCCGCc- -3'
miRNA:   3'- caUGa---CGCGGCUUa-GCa-CGCGGCGua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.