miRNA display CGI


Results 1 - 20 of 220 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23667 5' -45.3 NC_005261.1 + 43811 0.66 0.999983
Target:  5'- -gGGCGCcggGCGCGCccuccGUGGAGAa -3'
miRNA:   3'- cgUCGCGua-CGCGCGaau--UAUUUUUg -5'
23667 5' -45.3 NC_005261.1 + 55798 0.66 0.999983
Target:  5'- cGCGGCGCGcgGCcuuCGCcgccGUAAAGGCg -3'
miRNA:   3'- -CGUCGCGUa-CGc--GCGaau-UAUUUUUG- -5'
23667 5' -45.3 NC_005261.1 + 44737 0.66 0.999983
Target:  5'- uGCAGCugggccccgaGC-UGCGCGCgacccGGGAGCg -3'
miRNA:   3'- -CGUCG----------CGuACGCGCGaauuaUUUUUG- -5'
23667 5' -45.3 NC_005261.1 + 71210 0.66 0.999983
Target:  5'- aGCuGCGCGauggUGCGCGCg---------- -3'
miRNA:   3'- -CGuCGCGU----ACGCGCGaauuauuuuug -5'
23667 5' -45.3 NC_005261.1 + 31825 0.66 0.999983
Target:  5'- nCGGCGCGcgcugGCGCGCgccGUGcuGGCc -3'
miRNA:   3'- cGUCGCGUa----CGCGCGaauUAUuuUUG- -5'
23667 5' -45.3 NC_005261.1 + 55925 0.66 0.999983
Target:  5'- cGCAGCcgccGCcgGCGCGCa---------- -3'
miRNA:   3'- -CGUCG----CGuaCGCGCGaauuauuuuug -5'
23667 5' -45.3 NC_005261.1 + 36636 0.66 0.999983
Target:  5'- aCGGCGCGaagccgGCGCGCgggcuuGGGGCc -3'
miRNA:   3'- cGUCGCGUa-----CGCGCGaauuauUUUUG- -5'
23667 5' -45.3 NC_005261.1 + 133351 0.66 0.999983
Target:  5'- cGCGGCGC-UGCcGCGCa---------- -3'
miRNA:   3'- -CGUCGCGuACG-CGCGaauuauuuuug -5'
23667 5' -45.3 NC_005261.1 + 29972 0.66 0.999983
Target:  5'- gGCGGCGCG-GUGCGCc---------- -3'
miRNA:   3'- -CGUCGCGUaCGCGCGaauuauuuuug -5'
23667 5' -45.3 NC_005261.1 + 110531 0.66 0.999983
Target:  5'- cGgGGCGCAggaggGCGCGCg---------- -3'
miRNA:   3'- -CgUCGCGUa----CGCGCGaauuauuuuug -5'
23667 5' -45.3 NC_005261.1 + 86936 0.66 0.999983
Target:  5'- cGCcGCGCGcgGCGgGCUggucAAAGACc -3'
miRNA:   3'- -CGuCGCGUa-CGCgCGAauuaUUUUUG- -5'
23667 5' -45.3 NC_005261.1 + 20982 0.66 0.999981
Target:  5'- cGCGGCGCccuacccccuuagacGCGCGCcu--UGGGGGCg -3'
miRNA:   3'- -CGUCGCGua-------------CGCGCGaauuAUUUUUG- -5'
23667 5' -45.3 NC_005261.1 + 48443 0.66 0.999977
Target:  5'- cGCGGUGCGUG-GCGCg---------- -3'
miRNA:   3'- -CGUCGCGUACgCGCGaauuauuuuug -5'
23667 5' -45.3 NC_005261.1 + 12358 0.66 0.999977
Target:  5'- cGCGGCgGCAaccgGCGCGuCUUcGAUGGuGAGCu -3'
miRNA:   3'- -CGUCG-CGUa---CGCGC-GAA-UUAUU-UUUG- -5'
23667 5' -45.3 NC_005261.1 + 131196 0.66 0.999977
Target:  5'- cGCGGCGCGgucgccgccgGCGCGCc---------- -3'
miRNA:   3'- -CGUCGCGUa---------CGCGCGaauuauuuuug -5'
23667 5' -45.3 NC_005261.1 + 70830 0.66 0.999977
Target:  5'- gGC-GCGCcgGCGCGCg---------- -3'
miRNA:   3'- -CGuCGCGuaCGCGCGaauuauuuuug -5'
23667 5' -45.3 NC_005261.1 + 135781 0.66 0.999977
Target:  5'- -gAGCGCGUGC-CGCUgucgGAGguGACc -3'
miRNA:   3'- cgUCGCGUACGcGCGAauuaUUU--UUG- -5'
23667 5' -45.3 NC_005261.1 + 102112 0.66 0.999977
Target:  5'- aCAGCGCAgggGC-CGCcagg-GAGAACg -3'
miRNA:   3'- cGUCGCGUa--CGcGCGaauuaUUUUUG- -5'
23667 5' -45.3 NC_005261.1 + 134100 0.66 0.999977
Target:  5'- gGC-GCGCcgGCGCGCg---------- -3'
miRNA:   3'- -CGuCGCGuaCGCGCGaauuauuuuug -5'
23667 5' -45.3 NC_005261.1 + 53945 0.66 0.999977
Target:  5'- cGCGGCGCGc-CGCGCUcgcgGGUucggguggcaaAAGAGCg -3'
miRNA:   3'- -CGUCGCGUacGCGCGAa---UUA-----------UUUUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.