miRNA display CGI


Results 1 - 20 of 314 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23668 3' -53.8 NC_005261.1 + 77741 0.65 0.959331
Target:  5'- cGguACAACugggagccccuacGCAGC--CGGGG-CGGCg -3'
miRNA:   3'- -CguUGUUGu------------CGUCGuuGCCCCaGCCG- -5'
23668 3' -53.8 NC_005261.1 + 73394 0.66 0.95707
Target:  5'- cGCGcguGCAGCAcCAGguACGGGG-CcGCg -3'
miRNA:   3'- -CGU---UGUUGUcGUCguUGCCCCaGcCG- -5'
23668 3' -53.8 NC_005261.1 + 30971 0.66 0.95707
Target:  5'- cGCGACGGCccgccGCGGCGcaaGCGcaaGUCGGCc -3'
miRNA:   3'- -CGUUGUUGu----CGUCGU---UGCcc-CAGCCG- -5'
23668 3' -53.8 NC_005261.1 + 75195 0.66 0.95707
Target:  5'- cGCGGaccuucAUGGCGGCcGCGGuGG-CGGCg -3'
miRNA:   3'- -CGUUgu----UGUCGUCGuUGCC-CCaGCCG- -5'
23668 3' -53.8 NC_005261.1 + 101476 0.66 0.95707
Target:  5'- gGCGGCGGCGugaugcGCAGCAGguucuUGaGGUUGGCc -3'
miRNA:   3'- -CGUUGUUGU------CGUCGUU-----GCcCCAGCCG- -5'
23668 3' -53.8 NC_005261.1 + 50785 0.66 0.95707
Target:  5'- cGCGGCGGCGGCcgccccGGCGccgccgccaugACGGGcuccgcgCGGCu -3'
miRNA:   3'- -CGUUGUUGUCG------UCGU-----------UGCCCca-----GCCG- -5'
23668 3' -53.8 NC_005261.1 + 122286 0.66 0.95707
Target:  5'- aGCAuCAgcGCGGCcccgcugccgcaGGCGACGcccGGGcCGGCg -3'
miRNA:   3'- -CGUuGU--UGUCG------------UCGUUGC---CCCaGCCG- -5'
23668 3' -53.8 NC_005261.1 + 97642 0.66 0.95707
Target:  5'- aGCGggcGCGGguGCcGCAccuGgGGGGcCGGCg -3'
miRNA:   3'- -CGU---UGUUguCGuCGU---UgCCCCaGCCG- -5'
23668 3' -53.8 NC_005261.1 + 121638 0.66 0.95707
Target:  5'- gGCGGCcGCcGcCGGCGagcGCGGGcuguccgcGUCGGCg -3'
miRNA:   3'- -CGUUGuUGuC-GUCGU---UGCCC--------CAGCCG- -5'
23668 3' -53.8 NC_005261.1 + 74276 0.66 0.953113
Target:  5'- cGCGuCcGCGGCGG--GCGGGG-CGGUc -3'
miRNA:   3'- -CGUuGuUGUCGUCguUGCCCCaGCCG- -5'
23668 3' -53.8 NC_005261.1 + 130172 0.66 0.953113
Target:  5'- uCAGCGGCGcCGGCAGCaGGGagcugaCGGCc -3'
miRNA:   3'- cGUUGUUGUcGUCGUUGcCCCa-----GCCG- -5'
23668 3' -53.8 NC_005261.1 + 9625 0.66 0.953113
Target:  5'- gGCAgGCGGgGGUGGgGGCuGGGUgGGCg -3'
miRNA:   3'- -CGU-UGUUgUCGUCgUUGcCCCAgCCG- -5'
23668 3' -53.8 NC_005261.1 + 75581 0.66 0.953113
Target:  5'- gGCGGCGGC-GCGGCGcucgcgcgcgccGCGGacgcGGaCGGCg -3'
miRNA:   3'- -CGUUGUUGuCGUCGU------------UGCC----CCaGCCG- -5'
23668 3' -53.8 NC_005261.1 + 41888 0.66 0.953113
Target:  5'- cGCGGCGuacuCGcGCAGCgu-GGGGUUGGg -3'
miRNA:   3'- -CGUUGUu---GU-CGUCGuugCCCCAGCCg -5'
23668 3' -53.8 NC_005261.1 + 128510 0.66 0.953113
Target:  5'- cGCGGCGGCGGaGGCAGCcuccuGG-CGGCu -3'
miRNA:   3'- -CGUUGUUGUCgUCGUUGcc---CCaGCCG- -5'
23668 3' -53.8 NC_005261.1 + 53105 0.66 0.953113
Target:  5'- cGCAGCGccGCGGCGcugcgcgccGcCAACaGGG-CGGCg -3'
miRNA:   3'- -CGUUGU--UGUCGU---------C-GUUGcCCCaGCCG- -5'
23668 3' -53.8 NC_005261.1 + 24348 0.66 0.953113
Target:  5'- --cGCAAU-GCGGCuccCGGGGaucgUCGGCg -3'
miRNA:   3'- cguUGUUGuCGUCGuu-GCCCC----AGCCG- -5'
23668 3' -53.8 NC_005261.1 + 51698 0.66 0.953113
Target:  5'- cGCGcACGACuacuuccaccAGCuGCGG-GGGGUCGuGCg -3'
miRNA:   3'- -CGU-UGUUG----------UCGuCGUUgCCCCAGC-CG- -5'
23668 3' -53.8 NC_005261.1 + 110807 0.66 0.953113
Target:  5'- gGCGAggaGGCGGgGGCgGACGGGGccgCGGa -3'
miRNA:   3'- -CGUUg--UUGUCgUCG-UUGCCCCa--GCCg -5'
23668 3' -53.8 NC_005261.1 + 17122 0.66 0.953113
Target:  5'- uGUAucGCGGCGGCGGguACGccggcGGGUCGa- -3'
miRNA:   3'- -CGU--UGUUGUCGUCguUGC-----CCCAGCcg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.