miRNA display CGI


Results 1 - 20 of 128 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23679 5' -53.8 NC_005261.1 + 14123 0.65 0.96567
Target:  5'- -uCGGCUCgGGCGgugggcagucgcucGCGAGGACGcuccagccGCGAa -3'
miRNA:   3'- uuGUUGAGgCUGC--------------UGCUCCUGC--------UGCU- -5'
23679 5' -53.8 NC_005261.1 + 90063 0.66 0.963333
Target:  5'- cAGCGGCgccccgCgGGCGcCGAGGgcaGCGACGGg -3'
miRNA:   3'- -UUGUUGa-----GgCUGCuGCUCC---UGCUGCU- -5'
23679 5' -53.8 NC_005261.1 + 385 0.66 0.963333
Target:  5'- uGGCGGCggCGGCGGCGGcGGCGGCa- -3'
miRNA:   3'- -UUGUUGagGCUGCUGCUcCUGCUGcu -5'
23679 5' -53.8 NC_005261.1 + 108452 0.66 0.963333
Target:  5'- gAGCAGCgcgUCGuCGGCGAGGAucuccgcguCGGCGc -3'
miRNA:   3'- -UUGUUGa--GGCuGCUGCUCCU---------GCUGCu -5'
23679 5' -53.8 NC_005261.1 + 138056 0.66 0.963333
Target:  5'- uGGCGGCggCGGCGGCGGcGGCGGCa- -3'
miRNA:   3'- -UUGUUGagGCUGCUGCUcCUGCUGcu -5'
23679 5' -53.8 NC_005261.1 + 81220 0.66 0.963333
Target:  5'- --gGACcaCCGugGcgccCGAGGGCGGCGGg -3'
miRNA:   3'- uugUUGa-GGCugCu---GCUCCUGCUGCU- -5'
23679 5' -53.8 NC_005261.1 + 44014 0.66 0.963333
Target:  5'- -cCGGCUUCGGCG-CGGcGGGCGGCc- -3'
miRNA:   3'- uuGUUGAGGCUGCuGCU-CCUGCUGcu -5'
23679 5' -53.8 NC_005261.1 + 30833 0.66 0.963333
Target:  5'- gGACGGggCCGAgGAgGAGGAgGAgGAg -3'
miRNA:   3'- -UUGUUgaGGCUgCUgCUCCUgCUgCU- -5'
23679 5' -53.8 NC_005261.1 + 30680 0.66 0.959805
Target:  5'- gGACGGggaCGGgGACGGGGACGGgGAg -3'
miRNA:   3'- -UUGUUgagGCUgCUGCUCCUGCUgCU- -5'
23679 5' -53.8 NC_005261.1 + 133807 0.66 0.959805
Target:  5'- gGGCuGCUCgaCGGCGACGAGGcgcugcGCGGCc- -3'
miRNA:   3'- -UUGuUGAG--GCUGCUGCUCC------UGCUGcu -5'
23679 5' -53.8 NC_005261.1 + 62410 0.66 0.959805
Target:  5'- gAGCAGCUCCGcgccCGcCGAGGccaGCG-CGAg -3'
miRNA:   3'- -UUGUUGAGGCu---GCuGCUCC---UGCuGCU- -5'
23679 5' -53.8 NC_005261.1 + 98815 0.66 0.959805
Target:  5'- cGGCGGCgugCCggaaGACGGgGGGGugGGCGu -3'
miRNA:   3'- -UUGUUGa--GG----CUGCUgCUCCugCUGCu -5'
23679 5' -53.8 NC_005261.1 + 22530 0.66 0.959805
Target:  5'- cAACAACg-CGACGGagggcCGGGGccGCGGCGAg -3'
miRNA:   3'- -UUGUUGagGCUGCU-----GCUCC--UGCUGCU- -5'
23679 5' -53.8 NC_005261.1 + 22651 0.66 0.959805
Target:  5'- --aGACgcgCUGGCGGCGccuGGGCGGCGc -3'
miRNA:   3'- uugUUGa--GGCUGCUGCu--CCUGCUGCu -5'
23679 5' -53.8 NC_005261.1 + 72531 0.66 0.95605
Target:  5'- uGGCGGCUCgCugcGCGGCaGGGGACgGGCGAg -3'
miRNA:   3'- -UUGUUGAG-Gc--UGCUG-CUCCUG-CUGCU- -5'
23679 5' -53.8 NC_005261.1 + 116620 0.66 0.95605
Target:  5'- cGCAccgcccGC-CCGcCGACGAGGGCGAgGc -3'
miRNA:   3'- uUGU------UGaGGCuGCUGCUCCUGCUgCu -5'
23679 5' -53.8 NC_005261.1 + 43083 0.66 0.95605
Target:  5'- cACAACgcuaaacgCCGcGCGcuACGAGGACGugGc -3'
miRNA:   3'- uUGUUGa-------GGC-UGC--UGCUCCUGCugCu -5'
23679 5' -53.8 NC_005261.1 + 97824 0.66 0.95605
Target:  5'- cGCAGa--CGGCGgcaaaaACGGGGGCGGCGGg -3'
miRNA:   3'- uUGUUgagGCUGC------UGCUCCUGCUGCU- -5'
23679 5' -53.8 NC_005261.1 + 60043 0.66 0.95605
Target:  5'- -uCGGCgCCGACGGCGGcGGcgaagaGCGGCGGc -3'
miRNA:   3'- uuGUUGaGGCUGCUGCU-CC------UGCUGCU- -5'
23679 5' -53.8 NC_005261.1 + 47525 0.66 0.95605
Target:  5'- -uCAGCUCgaacuCGACGGCGuucccGGGcGCGGCGAa -3'
miRNA:   3'- uuGUUGAG-----GCUGCUGC-----UCC-UGCUGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.