miRNA display CGI


Results 21 - 40 of 128 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23679 5' -53.8 NC_005261.1 + 121247 0.68 0.90151
Target:  5'- -cCAGCUCCGACucgggguccgccgcaGACG-GGGCGGCc- -3'
miRNA:   3'- uuGUUGAGGCUG---------------CUGCuCCUGCUGcu -5'
23679 5' -53.8 NC_005261.1 + 119691 0.68 0.898917
Target:  5'- cGGCAGgUCCcgcuccacgcgcGGCGAUGAGGAgGGCGu -3'
miRNA:   3'- -UUGUUgAGG------------CUGCUGCUCCUgCUGCu -5'
23679 5' -53.8 NC_005261.1 + 118839 0.67 0.94338
Target:  5'- uGCcGCUCUG-CGGCgcgGAGGGCGGCGc -3'
miRNA:   3'- uUGuUGAGGCuGCUG---CUCCUGCUGCu -5'
23679 5' -53.8 NC_005261.1 + 117597 0.71 0.758151
Target:  5'- -uCGAUccugCCGACGAUGAcGACGACGAc -3'
miRNA:   3'- uuGUUGa---GGCUGCUGCUcCUGCUGCU- -5'
23679 5' -53.8 NC_005261.1 + 116620 0.66 0.95605
Target:  5'- cGCAccgcccGC-CCGcCGACGAGGGCGAgGc -3'
miRNA:   3'- uUGU------UGaGGCuGCUGCUCCUGCUgCu -5'
23679 5' -53.8 NC_005261.1 + 112915 0.68 0.89227
Target:  5'- cGCuGCgugCgCGAgGGCGAGGGCGGCGc -3'
miRNA:   3'- uUGuUGa--G-GCUgCUGCUCCUGCUGCu -5'
23679 5' -53.8 NC_005261.1 + 110785 0.67 0.94338
Target:  5'- gAACGuGCUCCgGGgGACGGcGGGCGAgGAg -3'
miRNA:   3'- -UUGU-UGAGG-CUgCUGCU-CCUGCUgCU- -5'
23679 5' -53.8 NC_005261.1 + 110217 0.67 0.93373
Target:  5'- cGCAACcUCGGCGACGccuccagcguGGGCGGCGc -3'
miRNA:   3'- uUGUUGaGGCUGCUGCu---------CCUGCUGCu -5'
23679 5' -53.8 NC_005261.1 + 109107 0.71 0.786617
Target:  5'- --gGACgCCGGCcAUGAGGGCGGCGGu -3'
miRNA:   3'- uugUUGaGGCUGcUGCUCCUGCUGCU- -5'
23679 5' -53.8 NC_005261.1 + 108863 0.69 0.870943
Target:  5'- aAGCGGCUCUGcaGCaGCGGguGGACGACGGc -3'
miRNA:   3'- -UUGUUGAGGC--UGcUGCU--CCUGCUGCU- -5'
23679 5' -53.8 NC_005261.1 + 108452 0.66 0.963333
Target:  5'- gAGCAGCgcgUCGuCGGCGAGGAucuccgcguCGGCGc -3'
miRNA:   3'- -UUGUUGa--GGCuGCUGCUCCU---------GCUGCu -5'
23679 5' -53.8 NC_005261.1 + 105147 0.67 0.94338
Target:  5'- cGCAGgUCCucGCGGCucGAGGGCGGCGu -3'
miRNA:   3'- uUGUUgAGGc-UGCUG--CUCCUGCUGCu -5'
23679 5' -53.8 NC_005261.1 + 103860 0.67 0.938677
Target:  5'- gAGCcGCggCGGCGGCG-GGGCGGCGc -3'
miRNA:   3'- -UUGuUGagGCUGCUGCuCCUGCUGCu -5'
23679 5' -53.8 NC_005261.1 + 100180 0.67 0.93373
Target:  5'- cGCAACgCCGugGCGGCGGGGcaGCGugGc -3'
miRNA:   3'- uUGUUGaGGC--UGCUGCUCC--UGCugCu -5'
23679 5' -53.8 NC_005261.1 + 99780 0.68 0.89227
Target:  5'- aGGCGGC-CCGggucccagucGCGGCGcGGAUGGCGAa -3'
miRNA:   3'- -UUGUUGaGGC----------UGCUGCuCCUGCUGCU- -5'
23679 5' -53.8 NC_005261.1 + 98815 0.66 0.959805
Target:  5'- cGGCGGCgugCCggaaGACGGgGGGGugGGCGu -3'
miRNA:   3'- -UUGUUGa--GG----CUGCUgCUCCugCUGCu -5'
23679 5' -53.8 NC_005261.1 + 98386 0.67 0.928539
Target:  5'- cGCAAUaCCGGCGugG-GGGCGggcGCGGa -3'
miRNA:   3'- uUGUUGaGGCUGCugCuCCUGC---UGCU- -5'
23679 5' -53.8 NC_005261.1 + 98048 0.68 0.89227
Target:  5'- uGGCGGCcgCgGGCGGCGGgaccgcGGGCGGCGGg -3'
miRNA:   3'- -UUGUUGa-GgCUGCUGCU------CCUGCUGCU- -5'
23679 5' -53.8 NC_005261.1 + 97943 0.76 0.504252
Target:  5'- -cCAGCUCCGGCGgcaACGAGGgaggugGCGGCGGa -3'
miRNA:   3'- uuGUUGAGGCUGC---UGCUCC------UGCUGCU- -5'
23679 5' -53.8 NC_005261.1 + 97824 0.66 0.95605
Target:  5'- cGCAGa--CGGCGgcaaaaACGGGGGCGGCGGg -3'
miRNA:   3'- uUGUUgagGCUGC------UGCUCCUGCUGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.