miRNA display CGI


Results 1 - 20 of 569 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23686 5' -58.4 NC_005261.1 + 31052 0.66 0.805374
Target:  5'- uCCCCAGcGCGGCGggaGCCgCCGCu--GCc -3'
miRNA:   3'- cGGGGUUuUGUCGC---CGG-GGCGucuCG- -5'
23686 5' -58.4 NC_005261.1 + 75074 0.66 0.805374
Target:  5'- cGCgCCG--GCGGgGGCUCgGCGG-GCa -3'
miRNA:   3'- -CGgGGUuuUGUCgCCGGGgCGUCuCG- -5'
23686 5' -58.4 NC_005261.1 + 15223 0.66 0.805374
Target:  5'- gGCUcgCCGAGcCGGCguugaGGCCCCGCucgcaguGGGCc -3'
miRNA:   3'- -CGG--GGUUUuGUCG-----CCGGGGCGu------CUCG- -5'
23686 5' -58.4 NC_005261.1 + 61401 0.66 0.805374
Target:  5'- aCUCCGGGcGCguGGUGGCCUCGCAGGa- -3'
miRNA:   3'- cGGGGUUU-UG--UCGCCGGGGCGUCUcg -5'
23686 5' -58.4 NC_005261.1 + 76038 0.66 0.805374
Target:  5'- cGCCCCGcgcgccauCAGCGuGgCCgGCGG-GCg -3'
miRNA:   3'- -CGGGGUuuu-----GUCGC-CgGGgCGUCuCG- -5'
23686 5' -58.4 NC_005261.1 + 37645 0.66 0.805374
Target:  5'- cGCCCCcAAGCccuuGGCcuuGGCCCC-C-GAGCc -3'
miRNA:   3'- -CGGGGuUUUG----UCG---CCGGGGcGuCUCG- -5'
23686 5' -58.4 NC_005261.1 + 1435 0.66 0.805374
Target:  5'- cGCCuCCAGcaccAGCGGCGGCgCCuCGGcGUg -3'
miRNA:   3'- -CGG-GGUU----UUGUCGCCGgGGcGUCuCG- -5'
23686 5' -58.4 NC_005261.1 + 20567 0.66 0.805374
Target:  5'- gGCUgC---GCAGCGGCgCCgGCGGcGCg -3'
miRNA:   3'- -CGGgGuuuUGUCGCCG-GGgCGUCuCG- -5'
23686 5' -58.4 NC_005261.1 + 71604 0.66 0.805374
Target:  5'- aGgCCCGccGCcGCGGCCCgggCGCGG-GCc -3'
miRNA:   3'- -CgGGGUuuUGuCGCCGGG---GCGUCuCG- -5'
23686 5' -58.4 NC_005261.1 + 101861 0.66 0.805374
Target:  5'- gGCCgCCu--GCAGCacGUCCgcgCGCAGGGCg -3'
miRNA:   3'- -CGG-GGuuuUGUCGc-CGGG---GCGUCUCG- -5'
23686 5' -58.4 NC_005261.1 + 94464 0.66 0.805374
Target:  5'- cCCCCuccgcguCGGCGucGUCCCGCGG-GCc -3'
miRNA:   3'- cGGGGuuuu---GUCGC--CGGGGCGUCuCG- -5'
23686 5' -58.4 NC_005261.1 + 131760 0.66 0.805374
Target:  5'- cGCCggCCGGcGCGGCgGGCgCgCCGCuGGGCc -3'
miRNA:   3'- -CGG--GGUUuUGUCG-CCG-G-GGCGuCUCG- -5'
23686 5' -58.4 NC_005261.1 + 94767 0.66 0.805374
Target:  5'- gGUUCgAGGAC-GUGGCgCCGCGcGAGCu -3'
miRNA:   3'- -CGGGgUUUUGuCGCCGgGGCGU-CUCG- -5'
23686 5' -58.4 NC_005261.1 + 107705 0.66 0.804494
Target:  5'- cGCCgCCGAAcgucgcugccgcgGCAgGCGGCUgcgccucggCCGCGGGGg -3'
miRNA:   3'- -CGG-GGUUU-------------UGU-CGCCGG---------GGCGUCUCg -5'
23686 5' -58.4 NC_005261.1 + 104512 0.66 0.804494
Target:  5'- cGCUCCGuggcggccgcGACGGCGGCCgCCaccaggcGCAGcuuGGCg -3'
miRNA:   3'- -CGGGGUu---------UUGUCGCCGG-GG-------CGUC---UCG- -5'
23686 5' -58.4 NC_005261.1 + 1544 0.66 0.80007
Target:  5'- cGCCCgCAGGccagguacaccggccGCAGCGGCg-CGCcGAGCc -3'
miRNA:   3'- -CGGG-GUUU---------------UGUCGCCGggGCGuCUCG- -5'
23686 5' -58.4 NC_005261.1 + 53519 0.66 0.796503
Target:  5'- cGCCCgAAGGCuGUGGCUgCCGUGuuGCg -3'
miRNA:   3'- -CGGGgUUUUGuCGCCGG-GGCGUcuCG- -5'
23686 5' -58.4 NC_005261.1 + 114554 0.66 0.796503
Target:  5'- aCCUCGgcGGGgAGCGGCCgCCGcCGGAucGCg -3'
miRNA:   3'- cGGGGU--UUUgUCGCCGG-GGC-GUCU--CG- -5'
23686 5' -58.4 NC_005261.1 + 123208 0.66 0.796503
Target:  5'- aGCCgCCGcguAAGC-GCGGCCugCCGCcuAGCg -3'
miRNA:   3'- -CGG-GGU---UUUGuCGCCGG--GGCGucUCG- -5'
23686 5' -58.4 NC_005261.1 + 12335 0.66 0.796503
Target:  5'- cGCUuggCCGGcGCGGCcGCCgCCGCGGcGGCa -3'
miRNA:   3'- -CGG---GGUUuUGUCGcCGG-GGCGUC-UCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.