miRNA display CGI


Results 1 - 20 of 207 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23690 3' -63.2 NC_005261.1 + 87145 0.66 0.547732
Target:  5'- -aGCUGCUCgCCGauGGCccgcugGCGCGCGUu -3'
miRNA:   3'- caCGGCGAG-GGCguCCGa-----CGCGUGCA- -5'
23690 3' -63.2 NC_005261.1 + 121685 0.66 0.547732
Target:  5'- -aGgCGC-CCUcCAGGUUGCGCAUGg -3'
miRNA:   3'- caCgGCGaGGGcGUCCGACGCGUGCa -5'
23690 3' -63.2 NC_005261.1 + 102925 0.66 0.547732
Target:  5'- -cGCCGCUUCgCGCAGcgccgccgccGCUGCG-GCGg -3'
miRNA:   3'- caCGGCGAGG-GCGUC----------CGACGCgUGCa -5'
23690 3' -63.2 NC_005261.1 + 98735 0.66 0.547732
Target:  5'- -gGCaCGCggCCgCGCGGGCguugGCcGCGCGg -3'
miRNA:   3'- caCG-GCGa-GG-GCGUCCGa---CG-CGUGCa -5'
23690 3' -63.2 NC_005261.1 + 63617 0.66 0.547732
Target:  5'- aUGCgGCUCCCaGCGuugacGCUgucGCGCACGa -3'
miRNA:   3'- cACGgCGAGGG-CGUc----CGA---CGCGUGCa -5'
23690 3' -63.2 NC_005261.1 + 460 0.66 0.538055
Target:  5'- -gGCCGCgacggCCgGCGGGaugGCGCGgGg -3'
miRNA:   3'- caCGGCGa----GGgCGUCCga-CGCGUgCa -5'
23690 3' -63.2 NC_005261.1 + 125943 0.66 0.538055
Target:  5'- -aGCCGCUggCGCGGGgU-CGCACGg -3'
miRNA:   3'- caCGGCGAggGCGUCCgAcGCGUGCa -5'
23690 3' -63.2 NC_005261.1 + 59229 0.66 0.538055
Target:  5'- aGUGCCGCcgggCCacgagcgagaGCGGGCgccgGCGCcacGCGUc -3'
miRNA:   3'- -CACGGCGa---GGg---------CGUCCGa---CGCG---UGCA- -5'
23690 3' -63.2 NC_005261.1 + 102310 0.66 0.538055
Target:  5'- -aGCCGCgCgCCGCGGccGCgGCGCGCa- -3'
miRNA:   3'- caCGGCGaG-GGCGUC--CGaCGCGUGca -5'
23690 3' -63.2 NC_005261.1 + 99462 0.66 0.538055
Target:  5'- -gGCCGa-CCCGC-GGCgGCGCugGc -3'
miRNA:   3'- caCGGCgaGGGCGuCCGaCGCGugCa -5'
23690 3' -63.2 NC_005261.1 + 87952 0.66 0.538055
Target:  5'- -cGCCGCcacggCCCGCcGGCgGCGgGCu- -3'
miRNA:   3'- caCGGCGa----GGGCGuCCGaCGCgUGca -5'
23690 3' -63.2 NC_005261.1 + 109814 0.66 0.538055
Target:  5'- -cGCCGCUUCCGCcgcGGCgGcCGC-CGa -3'
miRNA:   3'- caCGGCGAGGGCGu--CCGaC-GCGuGCa -5'
23690 3' -63.2 NC_005261.1 + 138131 0.66 0.538055
Target:  5'- -gGCCGCgacggCCgGCGGGaugGCGCGgGg -3'
miRNA:   3'- caCGGCGa----GGgCGUCCga-CGCGUgCa -5'
23690 3' -63.2 NC_005261.1 + 56101 0.66 0.538055
Target:  5'- -aGCgGCUCCUGCGcgagcggcGGgaGCGCGCc- -3'
miRNA:   3'- caCGgCGAGGGCGU--------CCgaCGCGUGca -5'
23690 3' -63.2 NC_005261.1 + 134424 0.66 0.538055
Target:  5'- cUGCUGCUCCaCGCugcucgcgGGGCUGCuggugaagGCGCu- -3'
miRNA:   3'- cACGGCGAGG-GCG--------UCCGACG--------CGUGca -5'
23690 3' -63.2 NC_005261.1 + 116175 0.66 0.538055
Target:  5'- -gGCCGCgucCCCGacgccGCUGgGCGCGUc -3'
miRNA:   3'- caCGGCGa--GGGCguc--CGACgCGUGCA- -5'
23690 3' -63.2 NC_005261.1 + 64927 0.66 0.538055
Target:  5'- cGUGCUccuGCUCgCCGCccagGGGC-GCGUGCGg -3'
miRNA:   3'- -CACGG---CGAG-GGCG----UCCGaCGCGUGCa -5'
23690 3' -63.2 NC_005261.1 + 101088 0.66 0.528438
Target:  5'- -cGCgGCcgCCUGCAGcGCggccGCGCGCGc -3'
miRNA:   3'- caCGgCGa-GGGCGUC-CGa---CGCGUGCa -5'
23690 3' -63.2 NC_005261.1 + 131947 0.66 0.528438
Target:  5'- gGUGcCCGCgCCCGUcuaccggguGGaGCUGCcGCGCGg -3'
miRNA:   3'- -CAC-GGCGaGGGCG---------UC-CGACG-CGUGCa -5'
23690 3' -63.2 NC_005261.1 + 36836 0.66 0.528438
Target:  5'- gGUGCCgGCgCCCGgGGGCUaGCcCGCGc -3'
miRNA:   3'- -CACGG-CGaGGGCgUCCGA-CGcGUGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.