miRNA display CGI


Results 1 - 20 of 234 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23691 3' -49.7 NC_005261.1 + 125827 0.65 0.997506
Target:  5'- aGCGggGCCGGaccgggcUUUGcaAGCCCagccaaGGCGg -3'
miRNA:   3'- gCGCuuUGGUU-------AAAUugUCGGG------CCGC- -5'
23691 3' -49.7 NC_005261.1 + 75329 0.66 0.99728
Target:  5'- gCGCGGAGCCcuguGaccuucgucggccucGUggAGCAGCugCCGGCGu -3'
miRNA:   3'- -GCGCUUUGG----U---------------UAaaUUGUCG--GGCCGC- -5'
23691 3' -49.7 NC_005261.1 + 46320 0.66 0.99728
Target:  5'- cCGCGAGGCUGcgcUUGGCcaugcgcccaaacucGGUCCGGCa -3'
miRNA:   3'- -GCGCUUUGGUua-AAUUG---------------UCGGGCCGc -5'
23691 3' -49.7 NC_005261.1 + 29511 0.66 0.997087
Target:  5'- cCGCGAcGCCA------UGGCCUGGCu -3'
miRNA:   3'- -GCGCUuUGGUuaaauuGUCGGGCCGc -5'
23691 3' -49.7 NC_005261.1 + 122370 0.66 0.997087
Target:  5'- uCGCGcgGCCccacc-GCGGCCUGGgGg -3'
miRNA:   3'- -GCGCuuUGGuuaaauUGUCGGGCCgC- -5'
23691 3' -49.7 NC_005261.1 + 119586 0.66 0.997087
Target:  5'- gCGCGAGACCG---UGGCcGCCCcGUa -3'
miRNA:   3'- -GCGCUUUGGUuaaAUUGuCGGGcCGc -5'
23691 3' -49.7 NC_005261.1 + 40673 0.66 0.997087
Target:  5'- cCGCGAcGCCGucggggAGcCGGCgCCGGCc -3'
miRNA:   3'- -GCGCUuUGGUuaaa--UU-GUCG-GGCCGc -5'
23691 3' -49.7 NC_005261.1 + 16264 0.66 0.997087
Target:  5'- cCGcCGggGCCGGgcuucGGCucGCCCGGgGg -3'
miRNA:   3'- -GC-GCuuUGGUUaaa--UUGu-CGGGCCgC- -5'
23691 3' -49.7 NC_005261.1 + 84994 0.66 0.997087
Target:  5'- gGCGcacCCAGUgcaUGACGGCCgCGGgGu -3'
miRNA:   3'- gCGCuuuGGUUAa--AUUGUCGG-GCCgC- -5'
23691 3' -49.7 NC_005261.1 + 133269 0.66 0.997087
Target:  5'- gCGCGAGuACCAG------GGCgCCGGCGc -3'
miRNA:   3'- -GCGCUU-UGGUUaaauugUCG-GGCCGC- -5'
23691 3' -49.7 NC_005261.1 + 31441 0.66 0.996986
Target:  5'- gGCGgcGCCGcccggcgagGACgAGCgCCGGCGg -3'
miRNA:   3'- gCGCuuUGGUuaaa-----UUG-UCG-GGCCGC- -5'
23691 3' -49.7 NC_005261.1 + 37256 0.66 0.996986
Target:  5'- gCGCgGAGACCAuccuggccgAGCcguGCCgCGGCGa -3'
miRNA:   3'- -GCG-CUUUGGUuaaa-----UUGu--CGG-GCCGC- -5'
23691 3' -49.7 NC_005261.1 + 47600 0.66 0.996776
Target:  5'- gCGCGAgggAGCCGcccccugcgggGGCGGCCgCGGCc -3'
miRNA:   3'- -GCGCU---UUGGUuaaa-------UUGUCGG-GCCGc -5'
23691 3' -49.7 NC_005261.1 + 86963 0.66 0.996554
Target:  5'- cCGUGAAGCaCAcgUccGGCGGCagcaCGGCGc -3'
miRNA:   3'- -GCGCUUUG-GUuaAa-UUGUCGg---GCCGC- -5'
23691 3' -49.7 NC_005261.1 + 80106 0.66 0.996554
Target:  5'- cCGCGguACCGGcUUGggcgccGCGGCagCGGCGg -3'
miRNA:   3'- -GCGCuuUGGUUaAAU------UGUCGg-GCCGC- -5'
23691 3' -49.7 NC_005261.1 + 47697 0.66 0.996554
Target:  5'- cCGCGgcGCCGcgUcGGCGGCgUCGGgGg -3'
miRNA:   3'- -GCGCuuUGGUuaAaUUGUCG-GGCCgC- -5'
23691 3' -49.7 NC_005261.1 + 68241 0.66 0.996554
Target:  5'- gGCGggGgCGuguucgugGACuGCCUGGCGc -3'
miRNA:   3'- gCGCuuUgGUuaaa----UUGuCGGGCCGC- -5'
23691 3' -49.7 NC_005261.1 + 101488 0.66 0.996554
Target:  5'- aUGCGcAGCagguucuugaGGUUggcCAGCCCGGCGc -3'
miRNA:   3'- -GCGCuUUGg---------UUAAauuGUCGGGCCGC- -5'
23691 3' -49.7 NC_005261.1 + 115613 0.66 0.996554
Target:  5'- aGCGAGGCCAGcacgucgcGGCAGCgCaGCGu -3'
miRNA:   3'- gCGCUUUGGUUaaa-----UUGUCGgGcCGC- -5'
23691 3' -49.7 NC_005261.1 + 22786 0.66 0.996554
Target:  5'- cCGCGAGAagggGGUUgucGCGGCCggCGGCGg -3'
miRNA:   3'- -GCGCUUUgg--UUAAau-UGUCGG--GCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.