miRNA display CGI


Results 21 - 40 of 234 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23691 3' -49.7 NC_005261.1 + 127838 0.66 0.995944
Target:  5'- cCGCGAgcAGCgGAcggGGCGGUCgCGGCGc -3'
miRNA:   3'- -GCGCU--UUGgUUaaaUUGUCGG-GCCGC- -5'
23691 3' -49.7 NC_005261.1 + 127364 0.7 0.961501
Target:  5'- cCGCGugGCUAGgaugucgUUGGCggcggcgaggAGCCCGGCGc -3'
miRNA:   3'- -GCGCuuUGGUUa------AAUUG----------UCGGGCCGC- -5'
23691 3' -49.7 NC_005261.1 + 127086 0.69 0.968346
Target:  5'- cCGCGccGCCGcaaUGACGGCUgGGCGc -3'
miRNA:   3'- -GCGCuuUGGUuaaAUUGUCGGgCCGC- -5'
23691 3' -49.7 NC_005261.1 + 126939 0.67 0.990176
Target:  5'- aGCGcgGCCAGg--GGC-GCCgGGCGc -3'
miRNA:   3'- gCGCuuUGGUUaaaUUGuCGGgCCGC- -5'
23691 3' -49.7 NC_005261.1 + 126794 0.75 0.801484
Target:  5'- uGCGucuGCCGAg--AGCAGCgCGGCGu -3'
miRNA:   3'- gCGCuu-UGGUUaaaUUGUCGgGCCGC- -5'
23691 3' -49.7 NC_005261.1 + 125827 0.65 0.997506
Target:  5'- aGCGggGCCGGaccgggcUUUGcaAGCCCagccaaGGCGg -3'
miRNA:   3'- gCGCuuUGGUU-------AAAUugUCGGG------CCGC- -5'
23691 3' -49.7 NC_005261.1 + 125681 0.69 0.974278
Target:  5'- cCGCcGAAUgGGUUUGccggGCuuGGCCCGGCGa -3'
miRNA:   3'- -GCGcUUUGgUUAAAU----UG--UCGGGCCGC- -5'
23691 3' -49.7 NC_005261.1 + 124069 0.77 0.658572
Target:  5'- aGCucGGCCGAcu--GCAGCCCGGCGc -3'
miRNA:   3'- gCGcuUUGGUUaaauUGUCGGGCCGC- -5'
23691 3' -49.7 NC_005261.1 + 123895 0.67 0.990176
Target:  5'- uCGCGGAagGCCGccgcuGUgggguGCGGCCCGaGCa -3'
miRNA:   3'- -GCGCUU--UGGU-----UAaau--UGUCGGGC-CGc -5'
23691 3' -49.7 NC_005261.1 + 122963 0.67 0.990176
Target:  5'- aGCGggGCCccacacACAgGCUCGGUGg -3'
miRNA:   3'- gCGCuuUGGuuaaauUGU-CGGGCCGC- -5'
23691 3' -49.7 NC_005261.1 + 122370 0.66 0.997087
Target:  5'- uCGCGcgGCCccacc-GCGGCCUGGgGg -3'
miRNA:   3'- -GCGCuuUGGuuaaauUGUCGGGCCgC- -5'
23691 3' -49.7 NC_005261.1 + 121061 0.66 0.996554
Target:  5'- uGUGgcGCgCGGUgugcGCGGCgCCGGCGg -3'
miRNA:   3'- gCGCuuUG-GUUAaau-UGUCG-GGCCGC- -5'
23691 3' -49.7 NC_005261.1 + 120588 0.69 0.971422
Target:  5'- aGCGucguGGCCGucgccuGCGGCCuCGGCGc -3'
miRNA:   3'- gCGCu---UUGGUuaaau-UGUCGG-GCCGC- -5'
23691 3' -49.7 NC_005261.1 + 119586 0.66 0.997087
Target:  5'- gCGCGAGACCG---UGGCcGCCCcGUa -3'
miRNA:   3'- -GCGCUUUGGUuaaAUUGuCGGGcCGc -5'
23691 3' -49.7 NC_005261.1 + 119105 0.66 0.996554
Target:  5'- aCGgGAGACCc--UUAaagauguaggccGCGGCCgCGGCGc -3'
miRNA:   3'- -GCgCUUUGGuuaAAU------------UGUCGG-GCCGC- -5'
23691 3' -49.7 NC_005261.1 + 118217 0.69 0.971422
Target:  5'- gCGCGggGCgc---UGACGGCCgCGGCc -3'
miRNA:   3'- -GCGCuuUGguuaaAUUGUCGG-GCCGc -5'
23691 3' -49.7 NC_005261.1 + 118045 0.73 0.87785
Target:  5'- cCGCGAcGCCcgcgcUGGCGGCCgCGGCa -3'
miRNA:   3'- -GCGCUuUGGuuaa-AUUGUCGG-GCCGc -5'
23691 3' -49.7 NC_005261.1 + 117919 0.69 0.979122
Target:  5'- gCGCGGgaacgaaGGCCGGcu--GCGGCCCGuGCGc -3'
miRNA:   3'- -GCGCU-------UUGGUUaaauUGUCGGGC-CGC- -5'
23691 3' -49.7 NC_005261.1 + 117695 0.67 0.993564
Target:  5'- gGCGAGGCCGGcccug-AGgCCGGCGc -3'
miRNA:   3'- gCGCUUUGGUUaaauugUCgGGCCGC- -5'
23691 3' -49.7 NC_005261.1 + 117169 0.67 0.991432
Target:  5'- gGCGGucGCCAAg--GAC--CCCGGCGg -3'
miRNA:   3'- gCGCUu-UGGUUaaaUUGucGGGCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.