miRNA display CGI


Results 1 - 20 of 412 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23692 5' -70.9 NC_005261.1 + 74271 0.66 0.305423
Target:  5'- gCGCGCGcGUCCGCggcgggcggggCGGUCgCCgccGGGCa -3'
miRNA:   3'- -GCGCGCcCGGGCG-----------GCCGGgGGa--CCCG- -5'
23692 5' -70.9 NC_005261.1 + 130853 0.66 0.305423
Target:  5'- gCGCGCGcGCCCgGCCGGgCgCC-GcGGCc -3'
miRNA:   3'- -GCGCGCcCGGG-CGGCCgGgGGaC-CCG- -5'
23692 5' -70.9 NC_005261.1 + 101735 0.66 0.305423
Target:  5'- cCGCGaucaGGGCCuCGCuCGGCagCUCCaGGuGCa -3'
miRNA:   3'- -GCGCg---CCCGG-GCG-GCCG--GGGGaCC-CG- -5'
23692 5' -70.9 NC_005261.1 + 83004 0.66 0.305423
Target:  5'- uCGCGCaccGaGCCgccguCGCCGGCgCCCCcgggaGGGCc -3'
miRNA:   3'- -GCGCGc--C-CGG-----GCGGCCG-GGGGa----CCCG- -5'
23692 5' -70.9 NC_005261.1 + 23223 0.66 0.305423
Target:  5'- cCGCGCGcaaaaGCCggugcagcggGCCGGCCUgCUcGGGCg -3'
miRNA:   3'- -GCGCGCc----CGGg---------CGGCCGGGgGA-CCCG- -5'
23692 5' -70.9 NC_005261.1 + 90379 0.66 0.305423
Target:  5'- uGCGCGGcgaggcCCCGCCGGCg----GGGCu -3'
miRNA:   3'- gCGCGCCc-----GGGCGGCCGggggaCCCG- -5'
23692 5' -70.9 NC_005261.1 + 129745 0.66 0.305423
Target:  5'- gGCG-GGGCCCGgccuucagcaCCGGCgaCCgccGGGCu -3'
miRNA:   3'- gCGCgCCCGGGC----------GGCCGggGGa--CCCG- -5'
23692 5' -70.9 NC_005261.1 + 111413 0.66 0.305423
Target:  5'- aCGgGCGGGCCacaCGCCGGC-----GGGCa -3'
miRNA:   3'- -GCgCGCCCGG---GCGGCCGggggaCCCG- -5'
23692 5' -70.9 NC_005261.1 + 36915 0.66 0.305423
Target:  5'- cCGCGCuGGGCCgGgaCGuaCUCCgGGGCc -3'
miRNA:   3'- -GCGCG-CCCGGgCg-GCcgGGGGaCCCG- -5'
23692 5' -70.9 NC_005261.1 + 104440 0.66 0.305423
Target:  5'- --aGCGGGCCCGCgucGCCgCCgccgGcGGCg -3'
miRNA:   3'- gcgCGCCCGGGCGgc-CGGgGGa---C-CCG- -5'
23692 5' -70.9 NC_005261.1 + 12642 0.66 0.304783
Target:  5'- gGCGCggucugGGGCCgCGCCGGCgcgacaucgucguCCUCgagcGGGUc -3'
miRNA:   3'- gCGCG------CCCGG-GCGGCCG-------------GGGGa---CCCG- -5'
23692 5' -70.9 NC_005261.1 + 37027 0.66 0.304783
Target:  5'- uGCGgGGGCgggaaacgcccaaCCGCCuGCCCCC-GGucccGCg -3'
miRNA:   3'- gCGCgCCCG-------------GGCGGcCGGGGGaCC----CG- -5'
23692 5' -70.9 NC_005261.1 + 111751 0.66 0.301598
Target:  5'- aGUGCGGGCagcucgugcaccugCGCUGcGCgCCCgGGGUg -3'
miRNA:   3'- gCGCGCCCGg-------------GCGGC-CGgGGGaCCCG- -5'
23692 5' -70.9 NC_005261.1 + 58263 0.66 0.299068
Target:  5'- cCGCGCcGcGCUCGCCGcGCUCacgGGGCc -3'
miRNA:   3'- -GCGCGcC-CGGGCGGC-CGGGggaCCCG- -5'
23692 5' -70.9 NC_005261.1 + 57368 0.66 0.299068
Target:  5'- cCGCGCGGcccgacGCCCGCCaGCagCUCgGGGa -3'
miRNA:   3'- -GCGCGCC------CGGGCGGcCGg-GGGaCCCg -5'
23692 5' -70.9 NC_005261.1 + 41072 0.66 0.299068
Target:  5'- gGCGC-GGUCCGCCGccaGCCCCCg---- -3'
miRNA:   3'- gCGCGcCCGGGCGGC---CGGGGGacccg -5'
23692 5' -70.9 NC_005261.1 + 42212 0.66 0.299068
Target:  5'- cCGCGCGGGCgccCCGCCGcgaGCUCCgCcGcGCg -3'
miRNA:   3'- -GCGCGCCCG---GGCGGC---CGGGG-GaCcCG- -5'
23692 5' -70.9 NC_005261.1 + 28120 0.66 0.299068
Target:  5'- gGgGgGGGCCUcgagGCgGGCgCCCUcGGCg -3'
miRNA:   3'- gCgCgCCCGGG----CGgCCGgGGGAcCCG- -5'
23692 5' -70.9 NC_005261.1 + 131833 0.66 0.299068
Target:  5'- uGaCGCGGcGCCCGCCuGCUgCg-GGGUg -3'
miRNA:   3'- gC-GCGCC-CGGGCGGcCGGgGgaCCCG- -5'
23692 5' -70.9 NC_005261.1 + 2988 0.66 0.299068
Target:  5'- gGgGCucGGCCUGgCGGCCCggcgCCgGGGCu -3'
miRNA:   3'- gCgCGc-CCGGGCgGCCGGG----GGaCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.