miRNA display CGI


Results 21 - 40 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23695 3' -50.7 NC_005261.1 + 90126 0.85 0.298251
Target:  5'- gCCCGCGgcgaGGGCGA----GGAGGGGGg -3'
miRNA:   3'- -GGGCGCaa--CCCGCUuuuuUCUUCCCC- -5'
23695 3' -50.7 NC_005261.1 + 87799 0.7 0.937621
Target:  5'- gCCGCGUccaUGgccGGCGggGcuGGGAcGGGGa -3'
miRNA:   3'- gGGCGCA---AC---CCGCuuUuuUCUU-CCCC- -5'
23695 3' -50.7 NC_005261.1 + 84098 0.76 0.712362
Target:  5'- -aUGCGccacggGGGCGGGAugGGGAGGGGg -3'
miRNA:   3'- ggGCGCaa----CCCGCUUUuuUCUUCCCC- -5'
23695 3' -50.7 NC_005261.1 + 81446 0.67 0.987206
Target:  5'- cCCCGCGgcGGGCGccgccagcAGcAGGGc -3'
miRNA:   3'- -GGGCGCaaCCCGCuuuuu---UCuUCCCc -5'
23695 3' -50.7 NC_005261.1 + 81344 0.69 0.959274
Target:  5'- gCCGuCGgcgGGGCGggGGcuuGcGGGGGg -3'
miRNA:   3'- gGGC-GCaa-CCCGCuuUUuu-CuUCCCC- -5'
23695 3' -50.7 NC_005261.1 + 80058 0.71 0.903401
Target:  5'- aCUgGCGgcGGGCGcgGGGGGcguGGGGGa -3'
miRNA:   3'- -GGgCGCaaCCCGCuuUUUUCu--UCCCC- -5'
23695 3' -50.7 NC_005261.1 + 78524 0.71 0.909731
Target:  5'- -gCGCGagcgGaGGCGGcGAGGGGAAGGGGa -3'
miRNA:   3'- ggGCGCaa--C-CCGCU-UUUUUCUUCCCC- -5'
23695 3' -50.7 NC_005261.1 + 78409 0.77 0.628908
Target:  5'- cUCCGUGcucugUGGGCGAu---GGggGGGGc -3'
miRNA:   3'- -GGGCGCa----ACCCGCUuuuuUCuuCCCC- -5'
23695 3' -50.7 NC_005261.1 + 74906 0.72 0.882942
Target:  5'- gCCCGCGcUGGccgcGCGggGGAGGGcgaggacGGGGa -3'
miRNA:   3'- -GGGCGCaACC----CGCuuUUUUCUu------CCCC- -5'
23695 3' -50.7 NC_005261.1 + 74416 0.7 0.951345
Target:  5'- gCCGCGggcgggaGGGcCGAGGAGAGcgcccccccggcGGGGGGu -3'
miRNA:   3'- gGGCGCaa-----CCC-GCUUUUUUC------------UUCCCC- -5'
23695 3' -50.7 NC_005261.1 + 74343 0.67 0.990359
Target:  5'- aCCGCaGgcGcGGCGGc---GGAAGGGGc -3'
miRNA:   3'- gGGCG-CaaC-CCGCUuuuuUCUUCCCC- -5'
23695 3' -50.7 NC_005261.1 + 73824 0.66 0.995891
Target:  5'- gCCCGCGccuagcccggcucUUGGGCGAGucggcgccccGGAGGcuuuuAAGcGGGu -3'
miRNA:   3'- -GGGCGC-------------AACCCGCUU----------UUUUC-----UUC-CCC- -5'
23695 3' -50.7 NC_005261.1 + 73255 0.68 0.975097
Target:  5'- cUCCGCGUUGaucucGCGGAGgcaguagcgGgcGAAGGGGu -3'
miRNA:   3'- -GGGCGCAACc----CGCUUU---------UuuCUUCCCC- -5'
23695 3' -50.7 NC_005261.1 + 69926 0.7 0.942444
Target:  5'- aCCGCaggGGGUGggGugGGAGccGGGGa -3'
miRNA:   3'- gGGCGcaaCCCGCuuUuuUCUU--CCCC- -5'
23695 3' -50.7 NC_005261.1 + 69294 0.66 0.995826
Target:  5'- cCCCgGCGcgGGGCGccgguggcggcGGGAGcGGGGGu -3'
miRNA:   3'- -GGG-CGCaaCCCGCuu---------UUUUCuUCCCC- -5'
23695 3' -50.7 NC_005261.1 + 68085 0.72 0.882942
Target:  5'- gCCCGCGg-GGGCGggGAGGccguGAAGuucGGGc -3'
miRNA:   3'- -GGGCGCaaCCCGCuuUUUU----CUUC---CCC- -5'
23695 3' -50.7 NC_005261.1 + 58290 0.71 0.927222
Target:  5'- gCCgGCGcgccgggGGGCGc--GGGGAGGGGGc -3'
miRNA:   3'- -GGgCGCaa-----CCCGCuuuUUUCUUCCCC- -5'
23695 3' -50.7 NC_005261.1 + 57794 0.71 0.932548
Target:  5'- uCgCGCGgcGGGCGcgcgaaggccguGAAGgcGAAGGGGu -3'
miRNA:   3'- -GgGCGCaaCCCGC------------UUUUuuCUUCCCC- -5'
23695 3' -50.7 NC_005261.1 + 57183 0.73 0.860372
Target:  5'- --aGUGggGucGGCGGGAAGGGggGGGGg -3'
miRNA:   3'- gggCGCaaC--CCGCUUUUUUCuuCCCC- -5'
23695 3' -50.7 NC_005261.1 + 57145 0.66 0.995955
Target:  5'- aUCGUGUuuauuggcaUGGGgGGAAAugGAGAGGaGGGn -3'
miRNA:   3'- gGGCGCA---------ACCCgCUUUU--UUCUUC-CCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.