Results 1 - 20 of 96 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23698 | 3' | -59 | NC_005261.1 | + | 71618 | 0.66 | 0.755621 |
Target: 5'- -gGCCcggGCGcGGGCCCgGgCGGCGGg -3' miRNA: 3'- aaCGGaaaCGU-CCUGGGgCgGCUGCU- -5' |
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23698 | 3' | -59 | NC_005261.1 | + | 31003 | 0.66 | 0.755621 |
Target: 5'- -gGCCgggGCcaGGGGCCCggCGCCGGCc- -3' miRNA: 3'- aaCGGaaaCG--UCCUGGG--GCGGCUGcu -5' |
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23698 | 3' | -59 | NC_005261.1 | + | 73705 | 0.66 | 0.755621 |
Target: 5'- -gGCCauggcGCAGGACCgCgGUCGGCGu -3' miRNA: 3'- aaCGGaaa--CGUCCUGG-GgCGGCUGCu -5' |
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23698 | 3' | -59 | NC_005261.1 | + | 98052 | 0.66 | 0.755621 |
Target: 5'- -gGCCgcgggcgGCGGGACCgCgGgCGGCGGg -3' miRNA: 3'- aaCGGaaa----CGUCCUGG-GgCgGCUGCU- -5' |
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23698 | 3' | -59 | NC_005261.1 | + | 31926 | 0.66 | 0.755621 |
Target: 5'- -cGCCgccGCuGGGCUCUGCCG-CGGc -3' miRNA: 3'- aaCGGaaaCGuCCUGGGGCGGCuGCU- -5' |
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23698 | 3' | -59 | NC_005261.1 | + | 5115 | 0.66 | 0.746008 |
Target: 5'- -cGCCagcucgGCGcGGGCggCCCGCCGGCGc -3' miRNA: 3'- aaCGGaaa---CGU-CCUG--GGGCGGCUGCu -5' |
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23698 | 3' | -59 | NC_005261.1 | + | 101673 | 0.66 | 0.746008 |
Target: 5'- -cGCCUc-GUAGG-CCgaGCCGGCGAa -3' miRNA: 3'- aaCGGAaaCGUCCuGGggCGGCUGCU- -5' |
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23698 | 3' | -59 | NC_005261.1 | + | 122989 | 0.66 | 0.746008 |
Target: 5'- -gGCCUccUGCAGGGCCaCUacgGCCG-CGGc -3' miRNA: 3'- aaCGGAa-ACGUCCUGG-GG---CGGCuGCU- -5' |
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23698 | 3' | -59 | NC_005261.1 | + | 31307 | 0.66 | 0.746008 |
Target: 5'- -cGCCgc-GCGGGGCCC-GCgGGCGc -3' miRNA: 3'- aaCGGaaaCGUCCUGGGgCGgCUGCu -5' |
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23698 | 3' | -59 | NC_005261.1 | + | 29133 | 0.66 | 0.746008 |
Target: 5'- -cGCCg--GgGGGcGCCCCGCCGGa-- -3' miRNA: 3'- aaCGGaaaCgUCC-UGGGGCGGCUgcu -5' |
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23698 | 3' | -59 | NC_005261.1 | + | 18659 | 0.66 | 0.746008 |
Target: 5'- -gGUCUcggGCGGG-CCCCaGCgGGCGAa -3' miRNA: 3'- aaCGGAaa-CGUCCuGGGG-CGgCUGCU- -5' |
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23698 | 3' | -59 | NC_005261.1 | + | 62529 | 0.66 | 0.736295 |
Target: 5'- -cGCCgcgcgGCAuGGGCCCCacGCCGA-GAg -3' miRNA: 3'- aaCGGaaa--CGU-CCUGGGG--CGGCUgCU- -5' |
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23698 | 3' | -59 | NC_005261.1 | + | 68131 | 0.66 | 0.736295 |
Target: 5'- -gGCCgcggcGCGGcGACCgCGCCGugGc -3' miRNA: 3'- aaCGGaaa--CGUC-CUGGgGCGGCugCu -5' |
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23698 | 3' | -59 | NC_005261.1 | + | 2769 | 0.66 | 0.736295 |
Target: 5'- -gGCCUcgagGCccgcccccgaGGGGCUgCCGCCGGCGGc -3' miRNA: 3'- aaCGGAaa--CG----------UCCUGG-GGCGGCUGCU- -5' |
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23698 | 3' | -59 | NC_005261.1 | + | 112060 | 0.66 | 0.736295 |
Target: 5'- -gGCCUU--CGGGcguGCCCuCGUCGGCGAg -3' miRNA: 3'- aaCGGAAacGUCC---UGGG-GCGGCUGCU- -5' |
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23698 | 3' | -59 | NC_005261.1 | + | 98304 | 0.66 | 0.736295 |
Target: 5'- -gGCCUcggggGCGGGcGCCgCCGCCaGCGGc -3' miRNA: 3'- aaCGGAaa---CGUCC-UGG-GGCGGcUGCU- -5' |
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23698 | 3' | -59 | NC_005261.1 | + | 129631 | 0.66 | 0.736295 |
Target: 5'- -cGCCUUUGCAGGcgGCaaCGgUGGCGGc -3' miRNA: 3'- aaCGGAAACGUCC--UGggGCgGCUGCU- -5' |
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23698 | 3' | -59 | NC_005261.1 | + | 34326 | 0.66 | 0.733363 |
Target: 5'- -gGCCga---GGGGCCCCaaggggccggggcgGCCGACGGg -3' miRNA: 3'- aaCGGaaacgUCCUGGGG--------------CGGCUGCU- -5' |
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23698 | 3' | -59 | NC_005261.1 | + | 40061 | 0.66 | 0.726492 |
Target: 5'- -gGCCcgUGCuGGAgcacgaggguCCCCGCUGGCa- -3' miRNA: 3'- aaCGGaaACGuCCU----------GGGGCGGCUGcu -5' |
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23698 | 3' | -59 | NC_005261.1 | + | 60152 | 0.66 | 0.726492 |
Target: 5'- -aGgCgcUGCAGGcGCCgCUGCCGugGAa -3' miRNA: 3'- aaCgGaaACGUCC-UGG-GGCGGCugCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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