miRNA display CGI


Results 1 - 20 of 179 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23698 5' -62.4 NC_005261.1 + 55027 0.66 0.665376
Target:  5'- cCCguaGCCGcCGGCCCCgCGcagcugcgcGggGCCg -3'
miRNA:   3'- -GGag-CGGCuGCUGGGGgGC---------CuuCGGa -5'
23698 5' -62.4 NC_005261.1 + 133784 0.66 0.665376
Target:  5'- cCCUCGUgCGGCGcauCCCgCCCGGGcuGCUc -3'
miRNA:   3'- -GGAGCG-GCUGCu--GGG-GGGCCUu-CGGa -5'
23698 5' -62.4 NC_005261.1 + 113587 0.66 0.665376
Target:  5'- gCCgCGCUGGgCGACCUcgcgCCCGGGcacccgcuGGCCa -3'
miRNA:   3'- -GGaGCGGCU-GCUGGG----GGGCCU--------UCGGa -5'
23698 5' -62.4 NC_005261.1 + 2991 0.66 0.665376
Target:  5'- gCUCgGCCuGGCGGCCCggcgccggggcuCCCGcGGGCCUc -3'
miRNA:   3'- gGAG-CGG-CUGCUGGG------------GGGCcUUCGGA- -5'
23698 5' -62.4 NC_005261.1 + 72010 0.66 0.665376
Target:  5'- gCCUuaaCGCCGggggcgacgcuGCGcGCCCCCgGGAAGUa- -3'
miRNA:   3'- -GGA---GCGGC-----------UGC-UGGGGGgCCUUCGga -5'
23698 5' -62.4 NC_005261.1 + 75687 0.66 0.665376
Target:  5'- uCCUCGCCGAgGACCagagCCUGcugcgcGCCa -3'
miRNA:   3'- -GGAGCGGCUgCUGGg---GGGCcuu---CGGa -5'
23698 5' -62.4 NC_005261.1 + 76126 0.66 0.665376
Target:  5'- gCCgCGCCGGCG-CCCgUCguGGAGGUCg -3'
miRNA:   3'- -GGaGCGGCUGCuGGGgGG--CCUUCGGa -5'
23698 5' -62.4 NC_005261.1 + 78070 0.66 0.665376
Target:  5'- cCCgCGCCGGCccaggcgcuGGCCCCCgCGccGGCCc -3'
miRNA:   3'- -GGaGCGGCUG---------CUGGGGG-GCcuUCGGa -5'
23698 5' -62.4 NC_005261.1 + 111775 0.66 0.665376
Target:  5'- gCUgcgCGcCCGGggUGugCCCCUGGAcGCCUg -3'
miRNA:   3'- -GGa--GC-GGCU--GCugGGGGGCCUuCGGA- -5'
23698 5' -62.4 NC_005261.1 + 75857 0.66 0.665376
Target:  5'- --gCGCCGACGGCggCCCCGacGgcGCCg -3'
miRNA:   3'- ggaGCGGCUGCUGg-GGGGC--CuuCGGa -5'
23698 5' -62.4 NC_005261.1 + 4571 0.66 0.664407
Target:  5'- --cCGCgGGCGgguccggcggggcGCCCCCCGGc-GCCa -3'
miRNA:   3'- ggaGCGgCUGC-------------UGGGGGGCCuuCGGa -5'
23698 5' -62.4 NC_005261.1 + 4989 0.66 0.663437
Target:  5'- cCCggagggCGCCGAgGcccccggGCCCCCCGGGuucuccgGGuCCUc -3'
miRNA:   3'- -GGa-----GCGGCUgC-------UGGGGGGCCU-------UC-GGA- -5'
23698 5' -62.4 NC_005261.1 + 10735 0.66 0.655672
Target:  5'- uCCUcCGCCGcCu-CCUCCCGGuccucGGCCUc -3'
miRNA:   3'- -GGA-GCGGCuGcuGGGGGGCCu----UCGGA- -5'
23698 5' -62.4 NC_005261.1 + 78330 0.66 0.655672
Target:  5'- aCgCGCCGACGcGCCaacgcgguaCCUCGGgcGCCa -3'
miRNA:   3'- gGaGCGGCUGC-UGG---------GGGGCCuuCGGa -5'
23698 5' -62.4 NC_005261.1 + 73036 0.66 0.655672
Target:  5'- gCCgucgCGCC-ACGcGCCCCCCGc--GCCUa -3'
miRNA:   3'- -GGa---GCGGcUGC-UGGGGGGCcuuCGGA- -5'
23698 5' -62.4 NC_005261.1 + 106659 0.66 0.655672
Target:  5'- gCUCGCCGGCGcggucguccagcGCgCgCCCGaGGGCCg -3'
miRNA:   3'- gGAGCGGCUGC------------UGgG-GGGCcUUCGGa -5'
23698 5' -62.4 NC_005261.1 + 663 0.66 0.655672
Target:  5'- cCCggCGCCGAguccUGGCCCUCCGcGGAcGCUc -3'
miRNA:   3'- -GGa-GCGGCU----GCUGGGGGGC-CUU-CGGa -5'
23698 5' -62.4 NC_005261.1 + 125268 0.66 0.655672
Target:  5'- uCCUCGuCCGGgGGCCg-CUGGAAGUCa -3'
miRNA:   3'- -GGAGC-GGCUgCUGGggGGCCUUCGGa -5'
23698 5' -62.4 NC_005261.1 + 32620 0.66 0.6547
Target:  5'- uCCUCGgaCGACGAgCCgggcucgCCCUGGAgcggGGCCa -3'
miRNA:   3'- -GGAGCg-GCUGCU-GG-------GGGGCCU----UCGGa -5'
23698 5' -62.4 NC_005261.1 + 64672 0.66 0.6547
Target:  5'- uCgUCGCCGugGugCggcaccgggcgcgUCCCGG-GGCCg -3'
miRNA:   3'- -GgAGCGGCugCugG-------------GGGGCCuUCGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.