miRNA display CGI


Results 21 - 40 of 179 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23698 5' -62.4 NC_005261.1 + 116720 0.66 0.616753
Target:  5'- gCUgGCCGACGucGCCgCCCUGcuGAGCCc -3'
miRNA:   3'- gGAgCGGCUGC--UGG-GGGGCc-UUCGGa -5'
23698 5' -62.4 NC_005261.1 + 115990 0.7 0.382454
Target:  5'- uCgUCGCUGACGAgCCgCCCGaGGcGGCCUg -3'
miRNA:   3'- -GgAGCGGCUGCUgGG-GGGC-CU-UCGGA- -5'
23698 5' -62.4 NC_005261.1 + 114995 0.76 0.186717
Target:  5'- gCCggcCGCCGcggcccCGGCCCCgCGGAGGCCUc -3'
miRNA:   3'- -GGa--GCGGCu-----GCUGGGGgGCCUUCGGA- -5'
23698 5' -62.4 NC_005261.1 + 113587 0.66 0.665376
Target:  5'- gCCgCGCUGGgCGACCUcgcgCCCGGGcacccgcuGGCCa -3'
miRNA:   3'- -GGaGCGGCU-GCUGGG----GGGCCU--------UCGGa -5'
23698 5' -62.4 NC_005261.1 + 111775 0.66 0.665376
Target:  5'- gCUgcgCGcCCGGggUGugCCCCUGGAcGCCUg -3'
miRNA:   3'- -GGa--GC-GGCU--GCugGGGGGCCUuCGGA- -5'
23698 5' -62.4 NC_005261.1 + 110941 0.74 0.252885
Target:  5'- aCCgagCGCCGcccgGCGGCCCaCCCGGGagAGCUg -3'
miRNA:   3'- -GGa--GCGGC----UGCUGGG-GGGCCU--UCGGa -5'
23698 5' -62.4 NC_005261.1 + 109881 0.66 0.607032
Target:  5'- gCC-CGCgGGCGGgCgCCCCGGGgcuacAGCCc -3'
miRNA:   3'- -GGaGCGgCUGCUgG-GGGGCCU-----UCGGa -5'
23698 5' -62.4 NC_005261.1 + 109547 0.68 0.493337
Target:  5'- cCCUCGCCacaaccgccGCGGCCCCCCuc--GCCg -3'
miRNA:   3'- -GGAGCGGc--------UGCUGGGGGGccuuCGGa -5'
23698 5' -62.4 NC_005261.1 + 109076 0.66 0.64595
Target:  5'- gCCUCGgCGAucaugccguUGGCCagguCCCGGAcGCCg -3'
miRNA:   3'- -GGAGCgGCU---------GCUGGg---GGGCCUuCGGa -5'
23698 5' -62.4 NC_005261.1 + 108703 0.66 0.636218
Target:  5'- aCUCGUCGACGAgCgCCaCGGcgaagagcgcgcGGGCCa -3'
miRNA:   3'- gGAGCGGCUGCUgGgGG-GCC------------UUCGGa -5'
23698 5' -62.4 NC_005261.1 + 107862 0.67 0.549277
Target:  5'- cCCUCGCCGGCcGCCCgcgcgcucgcgCCCGc-GGCCc -3'
miRNA:   3'- -GGAGCGGCUGcUGGG-----------GGGCcuUCGGa -5'
23698 5' -62.4 NC_005261.1 + 107805 0.71 0.344441
Target:  5'- gCCUCGCgcgCGGCGGCCCUagCGGccGCCg -3'
miRNA:   3'- -GGAGCG---GCUGCUGGGGg-GCCuuCGGa -5'
23698 5' -62.4 NC_005261.1 + 107648 0.67 0.594422
Target:  5'- cCCgCGCUGcgcgcgcaaacuccGCGGCCCCgCCGGGcguuGCCg -3'
miRNA:   3'- -GGaGCGGC--------------UGCUGGGG-GGCCUu---CGGa -5'
23698 5' -62.4 NC_005261.1 + 107125 0.67 0.558807
Target:  5'- aCCgCGCCGGCGACggcgCCCaCGGccgcGGCCa -3'
miRNA:   3'- -GGaGCGGCUGCUGg---GGG-GCCu---UCGGa -5'
23698 5' -62.4 NC_005261.1 + 106770 0.66 0.616753
Target:  5'- gCUUGCCGGCGGCCagCCCaGc-GCCg -3'
miRNA:   3'- gGAGCGGCUGCUGGg-GGGcCuuCGGa -5'
23698 5' -62.4 NC_005261.1 + 106659 0.66 0.655672
Target:  5'- gCUCGCCGGCGcggucguccagcGCgCgCCCGaGGGCCg -3'
miRNA:   3'- gGAGCGGCUGC------------UGgG-GGGCcUUCGGa -5'
23698 5' -62.4 NC_005261.1 + 106559 0.68 0.502491
Target:  5'- uCCggGCCGGCGcgcGCCggCCCCGG-GGCCg -3'
miRNA:   3'- -GGagCGGCUGC---UGG--GGGGCCuUCGGa -5'
23698 5' -62.4 NC_005261.1 + 104889 0.7 0.390385
Target:  5'- -aUCGCCGccGCGugCgCCCGGAcGCCc -3'
miRNA:   3'- ggAGCGGC--UGCugGgGGGCCUuCGGa -5'
23698 5' -62.4 NC_005261.1 + 102573 0.66 0.607032
Target:  5'- gCCUCGCCGuccgcgucgGCGGCCUcgCCCGc--GCCUu -3'
miRNA:   3'- -GGAGCGGC---------UGCUGGG--GGGCcuuCGGA- -5'
23698 5' -62.4 NC_005261.1 + 101910 0.69 0.466353
Target:  5'- uCCUCgaaaGCCG-CGugCCCCCGGcGGUa- -3'
miRNA:   3'- -GGAG----CGGCuGCugGGGGGCCuUCGga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.