miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23702 3' -60.5 NC_005261.1 + 34784 0.66 0.691301
Target:  5'- -cGGAcucGGAGGGcucGGAGGaGGAGGAGg- -3'
miRNA:   3'- cuCCUc--UCUCCC---UCUCC-CCUCCUCgu -5'
23702 3' -60.5 NC_005261.1 + 32885 0.66 0.691301
Target:  5'- uGGGGGGuucucuccaucgGGAGGGA-AGGGGcgcgcgugGGGGGCGg -3'
miRNA:   3'- -CUCCUC------------UCUCCCUcUCCCC--------UCCUCGU- -5'
23702 3' -60.5 NC_005261.1 + 27332 0.66 0.691301
Target:  5'- aGGGGGcGGAacGGGGGAaaGGGGGAGCGg -3'
miRNA:   3'- cUCCUC-UCU--CCCUCUccCCUCCUCGU- -5'
23702 3' -60.5 NC_005261.1 + 68588 0.66 0.675339
Target:  5'- cGAGGcGGGccgcGGGAGcggggccgacggcguGGGGGAGGAuGCGc -3'
miRNA:   3'- -CUCCuCUCu---CCCUC---------------UCCCCUCCU-CGU- -5'
23702 3' -60.5 NC_005261.1 + 27728 0.66 0.6613
Target:  5'- cGGGAG-GAGcGGAGAcgcgcGGGcaGAGGAGCc -3'
miRNA:   3'- cUCCUCuCUC-CCUCU-----CCC--CUCCUCGu -5'
23702 3' -60.5 NC_005261.1 + 30683 0.66 0.6613
Target:  5'- cGGGGAcgGGGAcGGGGAcGGGGAGGcccGCGg -3'
miRNA:   3'- -CUCCU--CUCUcCCUCU-CCCCUCCu--CGU- -5'
23702 3' -60.5 NC_005261.1 + 62744 0.66 0.652249
Target:  5'- -uGGAGGGcggccaggucgcuguGGGAGAGGucgccGGGGAGCAc -3'
miRNA:   3'- cuCCUCUCu--------------CCCUCUCCc----CUCCUCGU- -5'
23702 3' -60.5 NC_005261.1 + 26228 0.66 0.650236
Target:  5'- aAGGGGGGcAGcGGuGAuaagaccgcggauGGGGGGGGGCGg -3'
miRNA:   3'- cUCCUCUC-UC-CCuCU-------------CCCCUCCUCGU- -5'
23702 3' -60.5 NC_005261.1 + 25977 0.66 0.641171
Target:  5'- aGGGuGGAGcGGGAaacgauGAGGGGuGGGGCc -3'
miRNA:   3'- cUCC-UCUCuCCCU------CUCCCCuCCUCGu -5'
23702 3' -60.5 NC_005261.1 + 7133 0.67 0.631092
Target:  5'- aGAGGAGA-AGGaGGAGGaGGAGGAagaugauaugGCAg -3'
miRNA:   3'- -CUCCUCUcUCCcUCUCC-CCUCCU----------CGU- -5'
23702 3' -60.5 NC_005261.1 + 24017 0.67 0.621014
Target:  5'- aGGGGAGGGGGcGGAGcgcGGGGuucgGGuGGGCGu -3'
miRNA:   3'- -CUCCUCUCUC-CCUCu--CCCC----UC-CUCGU- -5'
23702 3' -60.5 NC_005261.1 + 28110 0.67 0.621014
Target:  5'- aGGGGuuAGAGGGGGGGGccucGAGGcgGGCGc -3'
miRNA:   3'- -CUCCucUCUCCCUCUCCc---CUCC--UCGU- -5'
23702 3' -60.5 NC_005261.1 + 34320 0.67 0.621014
Target:  5'- cGGGGAGGccGAGGGGccccaAGGGGccGGGGCGg -3'
miRNA:   3'- -CUCCUCU--CUCCCUc----UCCCCu-CCUCGU- -5'
23702 3' -60.5 NC_005261.1 + 74433 0.67 0.610945
Target:  5'- cGAGGAGAGcgcccccccGGcGGGGGGuGGGGGCGc -3'
miRNA:   3'- -CUCCUCUCuc-------CCuCUCCCC-UCCUCGU- -5'
23702 3' -60.5 NC_005261.1 + 28644 0.67 0.588856
Target:  5'- cGGGGGAGAGugacgaggccggcGGGGccgacgacgacgaGGGGGAGGAGgAa -3'
miRNA:   3'- cUCCUCUCUC-------------CCUC-------------UCCCCUCCUCgU- -5'
23702 3' -60.5 NC_005261.1 + 22984 0.67 0.580856
Target:  5'- gGAGGAGgcggcGGAGGaAGAGGGGGgcccGGAGgCGg -3'
miRNA:   3'- -CUCCUC-----UCUCCcUCUCCCCU----CCUC-GU- -5'
23702 3' -60.5 NC_005261.1 + 11452 0.68 0.570889
Target:  5'- aGAGGgaaaaagaagcGGAGcGGGcgcGGAGGGGcGGGGCGg -3'
miRNA:   3'- -CUCC-----------UCUCuCCC---UCUCCCCuCCUCGU- -5'
23702 3' -60.5 NC_005261.1 + 13713 0.68 0.560964
Target:  5'- uGGGGGcGGGGGuGGGGGuGGGGGUg -3'
miRNA:   3'- cUCCUCuCUCCCuCUCCCcUCCUCGu -5'
23702 3' -60.5 NC_005261.1 + 78517 0.68 0.541263
Target:  5'- uGGGGAGgcgcgagcGGAGGcGGcGAGGGGAaggGGAGCc -3'
miRNA:   3'- -CUCCUC--------UCUCC-CU-CUCCCCU---CCUCGu -5'
23702 3' -60.5 NC_005261.1 + 50596 0.68 0.5218
Target:  5'- cGGGGAGGGcAGGGAGAcGGGGcgccccgauuGGuGCu -3'
miRNA:   3'- -CUCCUCUC-UCCCUCU-CCCCu---------CCuCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.