miRNA display CGI


Results 1 - 20 of 515 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23704 3' -70.2 NC_005261.1 + 129001 0.66 0.344735
Target:  5'- aCCCggggaaaauuuacaCGUGCgGCUGCCCguagCCUACGCGg -3'
miRNA:   3'- gGGGg-------------GCGCGgCGGCGGG----GGGUGCGC- -5'
23704 3' -70.2 NC_005261.1 + 6460 0.66 0.341952
Target:  5'- gCUgCCCGCacaccCCGCC-CCaCCCCAgGCGc -3'
miRNA:   3'- -GGgGGGCGc----GGCGGcGG-GGGGUgCGC- -5'
23704 3' -70.2 NC_005261.1 + 25201 0.66 0.341952
Target:  5'- gCCUCgCUGCGauugGCCgGCCCCCC-CGCu -3'
miRNA:   3'- -GGGG-GGCGCgg--CGG-CGGGGGGuGCGc -5'
23704 3' -70.2 NC_005261.1 + 59636 0.66 0.341952
Target:  5'- -aCCUCGCgGUCGCUGUCCUCgAgGCGg -3'
miRNA:   3'- ggGGGGCG-CGGCGGCGGGGGgUgCGC- -5'
23704 3' -70.2 NC_005261.1 + 24099 0.66 0.341952
Target:  5'- aCCCCCGC-CUGCC-CaCCCCGgGCc -3'
miRNA:   3'- gGGGGGCGcGGCGGcGgGGGGUgCGc -5'
23704 3' -70.2 NC_005261.1 + 10918 0.66 0.341952
Target:  5'- gCCgCCGC-CgGCCGCgacaaCCCCCuucuCGCGg -3'
miRNA:   3'- gGGgGGCGcGgCGGCG-----GGGGGu---GCGC- -5'
23704 3' -70.2 NC_005261.1 + 79311 0.66 0.341258
Target:  5'- --gCCCGCGCaugauggccauguUGCCGUCCgucuugaCCACGCGg -3'
miRNA:   3'- gggGGGCGCG-------------GCGGCGGGg------GGUGCGC- -5'
23704 3' -70.2 NC_005261.1 + 116724 0.66 0.341258
Target:  5'- gCCgaCGuCGCCGCCcugcugaGCCCCUUugGCGc -3'
miRNA:   3'- gGGggGC-GCGGCGG-------CGGGGGGugCGC- -5'
23704 3' -70.2 NC_005261.1 + 100823 0.66 0.339184
Target:  5'- gCgCCUGCGCCGCCcagGCCgggagcucggcgaCCUGCGCGu -3'
miRNA:   3'- gGgGGGCGCGGCGG---CGGg------------GGGUGCGC- -5'
23704 3' -70.2 NC_005261.1 + 21098 0.66 0.337807
Target:  5'- uUCCgcgaCCGCGCCgggacaucauguacuGCCcaaGCCCCCacgaGCGCGu -3'
miRNA:   3'- -GGGg---GGCGCGG---------------CGG---CGGGGGg---UGCGC- -5'
23704 3' -70.2 NC_005261.1 + 85422 0.66 0.335064
Target:  5'- aCgCgCGCGCgCGCCGCCUCCgacaugUugGCGc -3'
miRNA:   3'- gGgGgGCGCG-GCGGCGGGGG------GugCGC- -5'
23704 3' -70.2 NC_005261.1 + 86295 0.66 0.335064
Target:  5'- --gCCCGCaggGCaCGUCGCCCUCCAgCGUGc -3'
miRNA:   3'- gggGGGCG---CG-GCGGCGGGGGGU-GCGC- -5'
23704 3' -70.2 NC_005261.1 + 51939 0.66 0.335064
Target:  5'- uCCCgCUCGuCGCCGgCGCCaccgacgacgCCgCCGCGCu -3'
miRNA:   3'- -GGG-GGGC-GCGGCgGCGG----------GG-GGUGCGc -5'
23704 3' -70.2 NC_005261.1 + 117286 0.66 0.335064
Target:  5'- -gCCUgGCGCCGagcCCGCccucgagcccagCCCCgGCGCGg -3'
miRNA:   3'- ggGGGgCGCGGC---GGCG------------GGGGgUGCGC- -5'
23704 3' -70.2 NC_005261.1 + 68276 0.66 0.335064
Target:  5'- gCgCCCGCGCgGCgggGCCCCggCCGCGgGc -3'
miRNA:   3'- gGgGGGCGCGgCGg--CGGGG--GGUGCgC- -5'
23704 3' -70.2 NC_005261.1 + 116925 0.66 0.335064
Target:  5'- gCCgCCGCggGCUGCuggaCGCCUUCCGCGCc -3'
miRNA:   3'- gGGgGGCG--CGGCG----GCGGGGGGUGCGc -5'
23704 3' -70.2 NC_005261.1 + 48749 0.66 0.335064
Target:  5'- -aCUgCGCGuaGUcgCGCCCCCCGgGCGg -3'
miRNA:   3'- ggGGgGCGCggCG--GCGGGGGGUgCGC- -5'
23704 3' -70.2 NC_005261.1 + 130657 0.66 0.335064
Target:  5'- gCCgaCGCGCUGCUccucggcgaGCCCcugCCCGCGCGc -3'
miRNA:   3'- gGGggGCGCGGCGG---------CGGG---GGGUGCGC- -5'
23704 3' -70.2 NC_005261.1 + 133140 0.66 0.335064
Target:  5'- cUCCCUgcggugCGCGCuCGCCGCCgUCgGCGUc -3'
miRNA:   3'- -GGGGG------GCGCG-GCGGCGGgGGgUGCGc -5'
23704 3' -70.2 NC_005261.1 + 105067 0.66 0.334381
Target:  5'- cCUCCCCGgcagggucCGCCGacuCCGCgCCCCGgaccuucCGCGg -3'
miRNA:   3'- -GGGGGGC--------GCGGC---GGCGgGGGGU-------GCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.