miRNA display CGI


Results 1 - 20 of 715 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23715 5' -67 NC_005261.1 + 90115 0.66 0.465713
Target:  5'- gGGCCgaCGCGGCCCgCGGCGAggG-CGa- -3'
miRNA:   3'- -CCGG--GCGCCGGG-GCCGCUggCaGCgg -5'
23715 5' -67 NC_005261.1 + 9971 0.66 0.465713
Target:  5'- aGCCCGCccccccggacGcGCCUCGGCGcggccacCCGcUUGCCa -3'
miRNA:   3'- cCGGGCG----------C-CGGGGCCGCu------GGC-AGCGG- -5'
23715 5' -67 NC_005261.1 + 4181 0.66 0.465713
Target:  5'- gGGCCCGCGaGCUUCGcGCucugcagccaGGCCauggcGUCGCg -3'
miRNA:   3'- -CCGGGCGC-CGGGGC-CG----------CUGG-----CAGCGg -5'
23715 5' -67 NC_005261.1 + 132925 0.66 0.465713
Target:  5'- cGGCUccugcccuucuaCGUGGuCCCCGaGCG-CUG-CGCCg -3'
miRNA:   3'- -CCGG------------GCGCC-GGGGC-CGCuGGCaGCGG- -5'
23715 5' -67 NC_005261.1 + 12198 0.66 0.465713
Target:  5'- uGCagCGCcGCCgCCGGUG-CCGcCGCCg -3'
miRNA:   3'- cCGg-GCGcCGG-GGCCGCuGGCaGCGG- -5'
23715 5' -67 NC_005261.1 + 48324 0.66 0.465713
Target:  5'- gGGCCCG-GGCUCgggggcgcgcgCGGCGagGCCGaggaGCCg -3'
miRNA:   3'- -CCGGGCgCCGGG-----------GCCGC--UGGCag--CGG- -5'
23715 5' -67 NC_005261.1 + 117435 0.66 0.465713
Target:  5'- -cCUCGgGGUUCCGGCGGCUGcUGCa -3'
miRNA:   3'- ccGGGCgCCGGGGCCGCUGGCaGCGg -5'
23715 5' -67 NC_005261.1 + 83664 0.66 0.465713
Target:  5'- aGGCggaCGCGcGCCUgGGCGcgcaGCgCGcCGCCg -3'
miRNA:   3'- -CCGg--GCGC-CGGGgCCGC----UG-GCaGCGG- -5'
23715 5' -67 NC_005261.1 + 102580 0.66 0.465713
Target:  5'- cGUCCGCG---UCGGCGGCC-UCGCCc -3'
miRNA:   3'- cCGGGCGCcggGGCCGCUGGcAGCGG- -5'
23715 5' -67 NC_005261.1 + 116046 0.66 0.465713
Target:  5'- cGCCaCGaUGGCCuuGGCGccCCGcguggcgCGCCg -3'
miRNA:   3'- cCGG-GC-GCCGGggCCGCu-GGCa------GCGG- -5'
23715 5' -67 NC_005261.1 + 48439 0.66 0.465713
Target:  5'- aGCUCGCGGUgCgUGGCGcgGCCGgCGCg -3'
miRNA:   3'- cCGGGCGCCGgG-GCCGC--UGGCaGCGg -5'
23715 5' -67 NC_005261.1 + 53997 0.66 0.465713
Target:  5'- aGCgCGCGGCgCacaGGCG-CCGcCGCg -3'
miRNA:   3'- cCGgGCGCCGgGg--CCGCuGGCaGCGg -5'
23715 5' -67 NC_005261.1 + 108433 0.66 0.465713
Target:  5'- cGGCaaCCGC-GUCCCGGCcgagcaGCgCGUCGUCg -3'
miRNA:   3'- -CCG--GGCGcCGGGGCCGc-----UG-GCAGCGG- -5'
23715 5' -67 NC_005261.1 + 96887 0.66 0.465713
Target:  5'- cGGaUCCGC-GCCUCGGCGuCCGccagcagaucUCGCg -3'
miRNA:   3'- -CC-GGGCGcCGGGGCCGCuGGC----------AGCGg -5'
23715 5' -67 NC_005261.1 + 88840 0.66 0.465713
Target:  5'- cGGCCC--GGCgUCGGCuaccugGGCCG-CGCCu -3'
miRNA:   3'- -CCGGGcgCCGgGGCCG------CUGGCaGCGG- -5'
23715 5' -67 NC_005261.1 + 4665 0.66 0.465713
Target:  5'- cGG-CCGCGGCggCGGCGGCCcccgUGUCa -3'
miRNA:   3'- -CCgGGCGCCGggGCCGCUGGca--GCGG- -5'
23715 5' -67 NC_005261.1 + 91362 0.66 0.464856
Target:  5'- aGGCCCGCcccaacgucaaGGaccgcauCCCCuacGUGAUCGUCGCg -3'
miRNA:   3'- -CCGGGCG-----------CC-------GGGGc--CGCUGGCAGCGg -5'
23715 5' -67 NC_005261.1 + 45049 0.66 0.458029
Target:  5'- aGGUCCGCGaaaUCCUGGCGGggccgcccacuuucaCGUCGUCg -3'
miRNA:   3'- -CCGGGCGCc--GGGGCCGCUg--------------GCAGCGG- -5'
23715 5' -67 NC_005261.1 + 32612 0.66 0.457179
Target:  5'- cGUCCGCGuCCUCGGaCGacgaGCCGggcUCGCCc -3'
miRNA:   3'- cCGGGCGCcGGGGCC-GC----UGGC---AGCGG- -5'
23715 5' -67 NC_005261.1 + 55038 0.66 0.457179
Target:  5'- cGGCCCcgcgcagcugcGCGGggCCGGCGAgcUCGgcCGCCg -3'
miRNA:   3'- -CCGGG-----------CGCCggGGCCGCU--GGCa-GCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.