miRNA display CGI


Results 21 - 40 of 715 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23715 5' -67 NC_005261.1 + 58689 0.66 0.423915
Target:  5'- aGGCCCG-GGCCgUcagGGCGcGCCGcugagaggugCGCCa -3'
miRNA:   3'- -CCGGGCgCCGGgG---CCGC-UGGCa---------GCGG- -5'
23715 5' -67 NC_005261.1 + 34916 0.66 0.423915
Target:  5'- aGGUCggggCGCGGCCacgcggggGGCGGCCGgCGCg -3'
miRNA:   3'- -CCGG----GCGCCGGgg------CCGCUGGCaGCGg -5'
23715 5' -67 NC_005261.1 + 119627 0.66 0.446212
Target:  5'- uGCaCUGCGgcguggccgacaacGCCaCCGGCGGCgCG-CGCCu -3'
miRNA:   3'- cCG-GGCGC--------------CGG-GGCCGCUG-GCaGCGG- -5'
23715 5' -67 NC_005261.1 + 80003 0.66 0.440368
Target:  5'- cGGCCgagcucacgGUGGUCaCCcgcuuguuGGCGucGCCGUCGCCg -3'
miRNA:   3'- -CCGGg--------CGCCGG-GG--------CCGC--UGGCAGCGG- -5'
23715 5' -67 NC_005261.1 + 132925 0.66 0.465713
Target:  5'- cGGCUccugcccuucuaCGUGGuCCCCGaGCG-CUG-CGCCg -3'
miRNA:   3'- -CCGG------------GCGCC-GGGGC-CGCuGGCaGCGG- -5'
23715 5' -67 NC_005261.1 + 131570 0.66 0.440368
Target:  5'- cGCCCgGCuGCCCCccgcGaCGGCCGagGCCu -3'
miRNA:   3'- cCGGG-CGcCGGGGc---C-GCUGGCagCGG- -5'
23715 5' -67 NC_005261.1 + 54999 0.66 0.440368
Target:  5'- cGCCgGCGGCCUCGugcacaacgacGCucCCGUagcCGCCg -3'
miRNA:   3'- cCGGgCGCCGGGGC-----------CGcuGGCA---GCGG- -5'
23715 5' -67 NC_005261.1 + 6347 0.66 0.423915
Target:  5'- uGCCCacCGGCCUCGcGcCGGuCCGgCGCCg -3'
miRNA:   3'- cCGGGc-GCCGGGGC-C-GCU-GGCaGCGG- -5'
23715 5' -67 NC_005261.1 + 92782 0.66 0.440368
Target:  5'- aGCCCG-GGCUcggggUCGGgGuCCGgUCGCCg -3'
miRNA:   3'- cCGGGCgCCGG-----GGCCgCuGGC-AGCGG- -5'
23715 5' -67 NC_005261.1 + 110243 0.66 0.446212
Target:  5'- gGGCggCGCGGCgCCCGGgGGgcugcgggccucccUCGUgGCCu -3'
miRNA:   3'- -CCGg-GCGCCG-GGGCCgCU--------------GGCAgCGG- -5'
23715 5' -67 NC_005261.1 + 12159 0.66 0.432096
Target:  5'- aGGCCCcaaGCCCCGcacaggccaGCG-CCGcCGCCa -3'
miRNA:   3'- -CCGGGcgcCGGGGC---------CGCuGGCaGCGG- -5'
23715 5' -67 NC_005261.1 + 49922 0.66 0.423915
Target:  5'- uGGCCCGCcucgaGGCgCCC-GCGgaGCCG-CGCa -3'
miRNA:   3'- -CCGGGCG-----CCG-GGGcCGC--UGGCaGCGg -5'
23715 5' -67 NC_005261.1 + 1592 0.66 0.440368
Target:  5'- cGGUUgGCGGCgCggUGGCuGGCCGccUCGCCc -3'
miRNA:   3'- -CCGGgCGCCGgG--GCCG-CUGGC--AGCGG- -5'
23715 5' -67 NC_005261.1 + 43431 0.66 0.440368
Target:  5'- cGCCgGCGGggagcuggCUCGGCGccuggaCGUCGCCg -3'
miRNA:   3'- cCGGgCGCCg-------GGGCCGCug----GCAGCGG- -5'
23715 5' -67 NC_005261.1 + 74516 0.66 0.432096
Target:  5'- cGGCgCCGgGGCCauGGCGcUUGggCGCCu -3'
miRNA:   3'- -CCG-GGCgCCGGggCCGCuGGCa-GCGG- -5'
23715 5' -67 NC_005261.1 + 95819 0.66 0.423915
Target:  5'- gGGCUCGCGGUCCucgCGGCGcUUGUgGgCg -3'
miRNA:   3'- -CCGGGCGCCGGG---GCCGCuGGCAgCgG- -5'
23715 5' -67 NC_005261.1 + 68184 0.66 0.423915
Target:  5'- cGCgCCGCgGGCCCCcucGCccCCGcCGCCg -3'
miRNA:   3'- cCG-GGCG-CCGGGGc--CGcuGGCaGCGG- -5'
23715 5' -67 NC_005261.1 + 127619 0.66 0.42229
Target:  5'- cGCuaGCGGCCggccggacgcgaCGGCGGCgG-CGCCg -3'
miRNA:   3'- cCGggCGCCGGg-----------GCCGCUGgCaGCGG- -5'
23715 5' -67 NC_005261.1 + 137707 0.66 0.440368
Target:  5'- gGGcCCCGCGcGaCCCCGGgGGgUGUUuuuuggggggggGCCg -3'
miRNA:   3'- -CC-GGGCGC-C-GGGGCCgCUgGCAG------------CGG- -5'
23715 5' -67 NC_005261.1 + 105269 0.66 0.440368
Target:  5'- aGGCUCggcggGCGGCagcgCCGGCGAgcCCGggCGCg -3'
miRNA:   3'- -CCGGG-----CGCCGg---GGCCGCU--GGCa-GCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.