miRNA display CGI


Results 1 - 20 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23716 5' -60.1 NC_005261.1 + 86866 0.66 0.738243
Target:  5'- aCgCC-GCCGGGcgcgGCgGCCUUGGCc -3'
miRNA:   3'- -GgGGcCGGCUCaaa-CGgCGGAACCGa -5'
23716 5' -60.1 NC_005261.1 + 134964 0.66 0.738243
Target:  5'- gCgCCGGCgacgcagacggCGAGgacgggGCCGCCggGGCg -3'
miRNA:   3'- -GgGGCCG-----------GCUCaaa---CGGCGGaaCCGa -5'
23716 5' -60.1 NC_005261.1 + 120965 0.66 0.728654
Target:  5'- gCCCC-GCgGGGcgcgUGCCGCCgcaGGCc -3'
miRNA:   3'- -GGGGcCGgCUCaa--ACGGCGGaa-CCGa -5'
23716 5' -60.1 NC_005261.1 + 114554 0.66 0.728654
Target:  5'- aCCUCGGCgGGGagcgGCCGCCgccGGa- -3'
miRNA:   3'- -GGGGCCGgCUCaaa-CGGCGGaa-CCga -5'
23716 5' -60.1 NC_005261.1 + 60417 0.66 0.728654
Target:  5'- gCCCgGGCCcGGg--GCCGCCgc-GCUc -3'
miRNA:   3'- -GGGgCCGGcUCaaaCGGCGGaacCGA- -5'
23716 5' -60.1 NC_005261.1 + 111886 0.66 0.72769
Target:  5'- gCUCCGGuacuuugagcucaCCGAGUacGCCGCCcUGuGCg -3'
miRNA:   3'- -GGGGCC-------------GGCUCAaaCGGCGGaAC-CGa -5'
23716 5' -60.1 NC_005261.1 + 86587 0.66 0.718985
Target:  5'- -gCCGGCgGcGgc-GCCGuCCUUGGCg -3'
miRNA:   3'- ggGGCCGgCuCaaaCGGC-GGAACCGa -5'
23716 5' -60.1 NC_005261.1 + 31275 0.66 0.717042
Target:  5'- aCCCCgaggcgcuGGCCGAGaucgcggcccGCCGCCgcgcggGGCc -3'
miRNA:   3'- -GGGG--------CCGGCUCaaa-------CGGCGGaa----CCGa -5'
23716 5' -60.1 NC_005261.1 + 12336 0.66 0.709245
Target:  5'- gCuuGGCCGGcgcgGCCGCCgccgcGGCg -3'
miRNA:   3'- gGggCCGGCUcaaaCGGCGGaa---CCGa -5'
23716 5' -60.1 NC_005261.1 + 14242 0.66 0.709245
Target:  5'- gCgCCGGCCGGGgccuUUGCC-CCggugucGGCUu -3'
miRNA:   3'- -GgGGCCGGCUCa---AACGGcGGaa----CCGA- -5'
23716 5' -60.1 NC_005261.1 + 45181 0.66 0.709245
Target:  5'- -aCCGcGCCGAGUgugaggccaUGCCGgCCUUccggGGCUu -3'
miRNA:   3'- ggGGC-CGGCUCAa--------ACGGC-GGAA----CCGA- -5'
23716 5' -60.1 NC_005261.1 + 4533 0.66 0.709245
Target:  5'- gCCgCGG-CGAGggcgccggGCCcugGCCUUGGCUg -3'
miRNA:   3'- -GGgGCCgGCUCaaa-----CGG---CGGAACCGA- -5'
23716 5' -60.1 NC_005261.1 + 103781 0.66 0.699442
Target:  5'- aCCCaGGCCGcGg--GCCGUCUUcGGUg -3'
miRNA:   3'- gGGG-CCGGCuCaaaCGGCGGAA-CCGa -5'
23716 5' -60.1 NC_005261.1 + 34335 0.66 0.699442
Target:  5'- gCCCCaaggGGCCGGGgcgGCCGaCggGGCc -3'
miRNA:   3'- -GGGG----CCGGCUCaaaCGGCgGaaCCGa -5'
23716 5' -60.1 NC_005261.1 + 30915 0.66 0.697475
Target:  5'- gCCCGGCCccucccgGCCGCC--GGCg -3'
miRNA:   3'- gGGGCCGGcucaaa-CGGCGGaaCCGa -5'
23716 5' -60.1 NC_005261.1 + 44012 0.66 0.689585
Target:  5'- gCCCGGCuucggcgcggCGGGcg-GCCGCCgcgcGGCg -3'
miRNA:   3'- gGGGCCG----------GCUCaaaCGGCGGaa--CCGa -5'
23716 5' -60.1 NC_005261.1 + 97164 0.66 0.689585
Target:  5'- gCCCGGCCGGcUggGUCGCg--GGCg -3'
miRNA:   3'- gGGGCCGGCUcAaaCGGCGgaaCCGa -5'
23716 5' -60.1 NC_005261.1 + 8791 0.67 0.679683
Target:  5'- cCCUCGGCgGcugcaGCCGCCgagGGCUu -3'
miRNA:   3'- -GGGGCCGgCucaaaCGGCGGaa-CCGA- -5'
23716 5' -60.1 NC_005261.1 + 89414 0.67 0.679683
Target:  5'- uCCUCGGCgCGuGcgcgGCCGCCg-GGCUc -3'
miRNA:   3'- -GGGGCCG-GCuCaaa-CGGCGGaaCCGA- -5'
23716 5' -60.1 NC_005261.1 + 11920 0.67 0.679683
Target:  5'- gCCCGGCCGGcGgcUGCggcggcccgCGCCgcGGCg -3'
miRNA:   3'- gGGGCCGGCU-CaaACG---------GCGGaaCCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.