miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23727 3' -54.3 NC_005261.1 + 130803 0.66 0.962708
Target:  5'- gCG-GAcGACgCCCAAUaCGUCGagGGCCa -3'
miRNA:   3'- -GCaCUaCUG-GGGUUA-GCGGCagCUGG- -5'
23727 3' -54.3 NC_005261.1 + 93243 0.66 0.962708
Target:  5'- -----cGGCCgCC-GUCGCCuUCGACCg -3'
miRNA:   3'- gcacuaCUGG-GGuUAGCGGcAGCUGG- -5'
23727 3' -54.3 NC_005261.1 + 61009 0.66 0.962708
Target:  5'- -----cGGCUCCGgcAUCGCCGUCGuggggcggcACCg -3'
miRNA:   3'- gcacuaCUGGGGU--UAGCGGCAGC---------UGG- -5'
23727 3' -54.3 NC_005261.1 + 51429 0.66 0.959186
Target:  5'- -cUGcugGGCCCCGGgcgCGCCGUgaUGAUCa -3'
miRNA:   3'- gcACua-CUGGGGUUa--GCGGCA--GCUGG- -5'
23727 3' -54.3 NC_005261.1 + 111784 0.66 0.959186
Target:  5'- cCGgGGUGuGCCCCuggaCGCCuggcucgcGUCGGCCg -3'
miRNA:   3'- -GCaCUAC-UGGGGuua-GCGG--------CAGCUGG- -5'
23727 3' -54.3 NC_005261.1 + 10280 0.66 0.959186
Target:  5'- -cUGAggacUGgcGCCCCGAcgcgcagcgccUCGCCGUUGACg -3'
miRNA:   3'- gcACU----AC--UGGGGUU-----------AGCGGCAGCUGg -5'
23727 3' -54.3 NC_005261.1 + 46164 0.66 0.959186
Target:  5'- ----cUGcGCCCCAGUCGCCGaUgGGCg -3'
miRNA:   3'- gcacuAC-UGGGGUUAGCGGC-AgCUGg -5'
23727 3' -54.3 NC_005261.1 + 133711 0.66 0.959186
Target:  5'- -----cGACCCCGG-CGCCGUCuACg -3'
miRNA:   3'- gcacuaCUGGGGUUaGCGGCAGcUGg -5'
23727 3' -54.3 NC_005261.1 + 121067 0.66 0.955442
Target:  5'- gCGcGGUGugCgCGG-CGCCGgCGGCCg -3'
miRNA:   3'- -GCaCUACugGgGUUaGCGGCaGCUGG- -5'
23727 3' -54.3 NC_005261.1 + 20855 0.66 0.955442
Target:  5'- gCGUGgcGGCUCUug-CGCCGcgggcCGGCCa -3'
miRNA:   3'- -GCACuaCUGGGGuuaGCGGCa----GCUGG- -5'
23727 3' -54.3 NC_005261.1 + 2498 0.66 0.955442
Target:  5'- gCG-GGUGGuCCgCGAgccgCGCCG-CGACCu -3'
miRNA:   3'- -GCaCUACU-GGgGUUa---GCGGCaGCUGG- -5'
23727 3' -54.3 NC_005261.1 + 97359 0.66 0.955442
Target:  5'- cCGUGGggucuacGGCCCgGgcguGUCGCCGcgCGGCUu -3'
miRNA:   3'- -GCACUa------CUGGGgU----UAGCGGCa-GCUGG- -5'
23727 3' -54.3 NC_005261.1 + 106365 0.66 0.955442
Target:  5'- cCGcGcUGACgCCGccGUCGCCGUUGccGCCg -3'
miRNA:   3'- -GCaCuACUGgGGU--UAGCGGCAGC--UGG- -5'
23727 3' -54.3 NC_005261.1 + 89291 0.66 0.951471
Target:  5'- --cGgcGGCCgCCAA-CGCCGagGACCu -3'
miRNA:   3'- gcaCuaCUGG-GGUUaGCGGCagCUGG- -5'
23727 3' -54.3 NC_005261.1 + 4503 0.66 0.94727
Target:  5'- --cGcgGGCCCCAGUCGCg--CGcCCg -3'
miRNA:   3'- gcaCuaCUGGGGUUAGCGgcaGCuGG- -5'
23727 3' -54.3 NC_005261.1 + 54085 0.66 0.94727
Target:  5'- cCGcGcgGACCgCCAcGUUGCCGaUGGCCg -3'
miRNA:   3'- -GCaCuaCUGG-GGU-UAGCGGCaGCUGG- -5'
23727 3' -54.3 NC_005261.1 + 32142 0.66 0.94727
Target:  5'- cCGcUGggGGCUCgGcgCGCCGcugCGGCCg -3'
miRNA:   3'- -GC-ACuaCUGGGgUuaGCGGCa--GCUGG- -5'
23727 3' -54.3 NC_005261.1 + 5048 0.67 0.942835
Target:  5'- -------cCCCCucGUCGUCGUCGGCCc -3'
miRNA:   3'- gcacuacuGGGGu-UAGCGGCAGCUGG- -5'
23727 3' -54.3 NC_005261.1 + 113576 0.67 0.938165
Target:  5'- gGUcGGUGGCCgCCg--CGCUGggCGACCu -3'
miRNA:   3'- gCA-CUACUGG-GGuuaGCGGCa-GCUGG- -5'
23727 3' -54.3 NC_005261.1 + 128856 0.67 0.938165
Target:  5'- --cGGUG-CCCCGccucGUCGCUGcCGACg -3'
miRNA:   3'- gcaCUACuGGGGU----UAGCGGCaGCUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.