Results 1 - 20 of 305 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23740 | 3' | -62.2 | NC_005261.1 | + | 138193 | 0.74 | 0.21171 |
Target: 5'- aGGGCGCGgGCGgGCGGGggGCAgGGc -3' miRNA: 3'- gCCCGCGCgUGCgCGUCCa-CGUgCUc -5' |
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23740 | 3' | -62.2 | NC_005261.1 | + | 138126 | 0.66 | 0.607451 |
Target: 5'- aCGGGgGC-CGCGacggccgGCGGGaugGCGCGGGg -3' miRNA: 3'- -GCCCgCGcGUGCg------CGUCCa--CGUGCUC- -5' |
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23740 | 3' | -62.2 | NC_005261.1 | + | 137753 | 0.74 | 0.21171 |
Target: 5'- uCGGcGCGCGCGgGgGCGGG-GUGCGGGg -3' miRNA: 3'- -GCC-CGCGCGUgCgCGUCCaCGUGCUC- -5' |
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23740 | 3' | -62.2 | NC_005261.1 | + | 137048 | 0.67 | 0.578001 |
Target: 5'- aGGGCGgaccgucgGCAgGCGCGGaG-GCGCGGGc -3' miRNA: 3'- gCCCGCg-------CGUgCGCGUC-CaCGUGCUC- -5' |
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23740 | 3' | -62.2 | NC_005261.1 | + | 136915 | 0.67 | 0.548873 |
Target: 5'- uGGGCcgcgcggccgcgGCGCAUGUGguGGUaCAUGGGc -3' miRNA: 3'- gCCCG------------CGCGUGCGCguCCAcGUGCUC- -5' |
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23740 | 3' | -62.2 | NC_005261.1 | + | 136614 | 0.77 | 0.150726 |
Target: 5'- aGcGGCGCGCGCGCGCcgAGG-GCgGCGGGa -3' miRNA: 3'- gC-CCGCGCGUGCGCG--UCCaCG-UGCUC- -5' |
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23740 | 3' | -62.2 | NC_005261.1 | + | 136562 | 0.69 | 0.429671 |
Target: 5'- uGGGgGCagaAgGCGCGGGUGgGCGGGc -3' miRNA: 3'- gCCCgCGcg-UgCGCGUCCACgUGCUC- -5' |
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23740 | 3' | -62.2 | NC_005261.1 | + | 136456 | 0.67 | 0.581913 |
Target: 5'- gGGGCaCGCggcagccccagacucGCGCGCGGGcaGCAgCGAGc -3' miRNA: 3'- gCCCGcGCG---------------UGCGCGUCCa-CGU-GCUC- -5' |
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23740 | 3' | -62.2 | NC_005261.1 | + | 135746 | 0.67 | 0.548873 |
Target: 5'- -uGGCGCGCcucagcCGCGC-GGUGCGCu-- -3' miRNA: 3'- gcCCGCGCGu-----GCGCGuCCACGUGcuc -5' |
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23740 | 3' | -62.2 | NC_005261.1 | + | 135451 | 0.69 | 0.429671 |
Target: 5'- gGcGGCGCGgGCGCuGCGGGaccucguacUGCGCGGc -3' miRNA: 3'- gC-CCGCGCgUGCG-CGUCC---------ACGUGCUc -5' |
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23740 | 3' | -62.2 | NC_005261.1 | + | 135254 | 0.67 | 0.552732 |
Target: 5'- gCGGGCGCGCggauggacaucAUGCggccugugcagaacgGCGGGUuccGCGCGAc -3' miRNA: 3'- -GCCCGCGCG-----------UGCG---------------CGUCCA---CGUGCUc -5' |
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23740 | 3' | -62.2 | NC_005261.1 | + | 134999 | 0.66 | 0.58779 |
Target: 5'- gGGGCGCcccugGCGCG-GCGGGcccGCACGcGg -3' miRNA: 3'- gCCCGCG-----CGUGCgCGUCCa--CGUGCuC- -5' |
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23740 | 3' | -62.2 | NC_005261.1 | + | 134911 | 0.72 | 0.299396 |
Target: 5'- gCGGGUGCGCAaGCGCAa--GCugGAGa -3' miRNA: 3'- -GCCCGCGCGUgCGCGUccaCGugCUC- -5' |
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23740 | 3' | -62.2 | NC_005261.1 | + | 134565 | 0.69 | 0.438317 |
Target: 5'- uGGGCgGCGCcgcgGCuGCGCAGGgcggGCcugGCGAGc -3' miRNA: 3'- gCCCG-CGCG----UG-CGCGUCCa---CG---UGCUC- -5' |
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23740 | 3' | -62.2 | NC_005261.1 | + | 134237 | 0.66 | 0.58779 |
Target: 5'- uCGGcGUgGCGCACGCGCcc-UGCGCGGc -3' miRNA: 3'- -GCC-CG-CGCGUGCGCGuccACGUGCUc -5' |
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23740 | 3' | -62.2 | NC_005261.1 | + | 134192 | 0.7 | 0.404348 |
Target: 5'- aGGGCcugGCGCggcucgGCGCGCGGGU-CGCGGc -3' miRNA: 3'- gCCCG---CGCG------UGCGCGUCCAcGUGCUc -5' |
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23740 | 3' | -62.2 | NC_005261.1 | + | 133631 | 0.71 | 0.35663 |
Target: 5'- uGGGcCGCGCucgcCGCGCcGcUGCGCGAGc -3' miRNA: 3'- gCCC-GCGCGu---GCGCGuCcACGUGCUC- -5' |
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23740 | 3' | -62.2 | NC_005261.1 | + | 133542 | 0.73 | 0.261318 |
Target: 5'- gGGGCGCGCA-GCGCAGcaugcUGCuCGGGg -3' miRNA: 3'- gCCCGCGCGUgCGCGUCc----ACGuGCUC- -5' |
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23740 | 3' | -62.2 | NC_005261.1 | + | 133350 | 0.68 | 0.473862 |
Target: 5'- gCGcGGCGCuGC-CGCGCAGGgcuucggcugccUGCGCGcGg -3' miRNA: 3'- -GC-CCGCG-CGuGCGCGUCC------------ACGUGCuC- -5' |
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23740 | 3' | -62.2 | NC_005261.1 | + | 133128 | 0.67 | 0.578001 |
Target: 5'- -cGGCGUGCGCGUcucccuGC-GGUGCGCGc- -3' miRNA: 3'- gcCCGCGCGUGCG------CGuCCACGUGCuc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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