miRNA display CGI


Results 1 - 20 of 305 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23740 3' -62.2 NC_005261.1 + 138193 0.74 0.21171
Target:  5'- aGGGCGCGgGCGgGCGGGggGCAgGGc -3'
miRNA:   3'- gCCCGCGCgUGCgCGUCCa-CGUgCUc -5'
23740 3' -62.2 NC_005261.1 + 138126 0.66 0.607451
Target:  5'- aCGGGgGC-CGCGacggccgGCGGGaugGCGCGGGg -3'
miRNA:   3'- -GCCCgCGcGUGCg------CGUCCa--CGUGCUC- -5'
23740 3' -62.2 NC_005261.1 + 137753 0.74 0.21171
Target:  5'- uCGGcGCGCGCGgGgGCGGG-GUGCGGGg -3'
miRNA:   3'- -GCC-CGCGCGUgCgCGUCCaCGUGCUC- -5'
23740 3' -62.2 NC_005261.1 + 137048 0.67 0.578001
Target:  5'- aGGGCGgaccgucgGCAgGCGCGGaG-GCGCGGGc -3'
miRNA:   3'- gCCCGCg-------CGUgCGCGUC-CaCGUGCUC- -5'
23740 3' -62.2 NC_005261.1 + 136915 0.67 0.548873
Target:  5'- uGGGCcgcgcggccgcgGCGCAUGUGguGGUaCAUGGGc -3'
miRNA:   3'- gCCCG------------CGCGUGCGCguCCAcGUGCUC- -5'
23740 3' -62.2 NC_005261.1 + 136614 0.77 0.150726
Target:  5'- aGcGGCGCGCGCGCGCcgAGG-GCgGCGGGa -3'
miRNA:   3'- gC-CCGCGCGUGCGCG--UCCaCG-UGCUC- -5'
23740 3' -62.2 NC_005261.1 + 136562 0.69 0.429671
Target:  5'- uGGGgGCagaAgGCGCGGGUGgGCGGGc -3'
miRNA:   3'- gCCCgCGcg-UgCGCGUCCACgUGCUC- -5'
23740 3' -62.2 NC_005261.1 + 136456 0.67 0.581913
Target:  5'- gGGGCaCGCggcagccccagacucGCGCGCGGGcaGCAgCGAGc -3'
miRNA:   3'- gCCCGcGCG---------------UGCGCGUCCa-CGU-GCUC- -5'
23740 3' -62.2 NC_005261.1 + 135746 0.67 0.548873
Target:  5'- -uGGCGCGCcucagcCGCGC-GGUGCGCu-- -3'
miRNA:   3'- gcCCGCGCGu-----GCGCGuCCACGUGcuc -5'
23740 3' -62.2 NC_005261.1 + 135451 0.69 0.429671
Target:  5'- gGcGGCGCGgGCGCuGCGGGaccucguacUGCGCGGc -3'
miRNA:   3'- gC-CCGCGCgUGCG-CGUCC---------ACGUGCUc -5'
23740 3' -62.2 NC_005261.1 + 135254 0.67 0.552732
Target:  5'- gCGGGCGCGCggauggacaucAUGCggccugugcagaacgGCGGGUuccGCGCGAc -3'
miRNA:   3'- -GCCCGCGCG-----------UGCG---------------CGUCCA---CGUGCUc -5'
23740 3' -62.2 NC_005261.1 + 134999 0.66 0.58779
Target:  5'- gGGGCGCcccugGCGCG-GCGGGcccGCACGcGg -3'
miRNA:   3'- gCCCGCG-----CGUGCgCGUCCa--CGUGCuC- -5'
23740 3' -62.2 NC_005261.1 + 134911 0.72 0.299396
Target:  5'- gCGGGUGCGCAaGCGCAa--GCugGAGa -3'
miRNA:   3'- -GCCCGCGCGUgCGCGUccaCGugCUC- -5'
23740 3' -62.2 NC_005261.1 + 134565 0.69 0.438317
Target:  5'- uGGGCgGCGCcgcgGCuGCGCAGGgcggGCcugGCGAGc -3'
miRNA:   3'- gCCCG-CGCG----UG-CGCGUCCa---CG---UGCUC- -5'
23740 3' -62.2 NC_005261.1 + 134237 0.66 0.58779
Target:  5'- uCGGcGUgGCGCACGCGCcc-UGCGCGGc -3'
miRNA:   3'- -GCC-CG-CGCGUGCGCGuccACGUGCUc -5'
23740 3' -62.2 NC_005261.1 + 134192 0.7 0.404348
Target:  5'- aGGGCcugGCGCggcucgGCGCGCGGGU-CGCGGc -3'
miRNA:   3'- gCCCG---CGCG------UGCGCGUCCAcGUGCUc -5'
23740 3' -62.2 NC_005261.1 + 133631 0.71 0.35663
Target:  5'- uGGGcCGCGCucgcCGCGCcGcUGCGCGAGc -3'
miRNA:   3'- gCCC-GCGCGu---GCGCGuCcACGUGCUC- -5'
23740 3' -62.2 NC_005261.1 + 133542 0.73 0.261318
Target:  5'- gGGGCGCGCA-GCGCAGcaugcUGCuCGGGg -3'
miRNA:   3'- gCCCGCGCGUgCGCGUCc----ACGuGCUC- -5'
23740 3' -62.2 NC_005261.1 + 133350 0.68 0.473862
Target:  5'- gCGcGGCGCuGC-CGCGCAGGgcuucggcugccUGCGCGcGg -3'
miRNA:   3'- -GC-CCGCG-CGuGCGCGUCC------------ACGUGCuC- -5'
23740 3' -62.2 NC_005261.1 + 133128 0.67 0.578001
Target:  5'- -cGGCGUGCGCGUcucccuGC-GGUGCGCGc- -3'
miRNA:   3'- gcCCGCGCGUGCG------CGuCCACGUGCuc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.