miRNA display CGI


Results 1 - 20 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23740 5' -56.3 NC_005261.1 + 113338 0.66 0.902416
Target:  5'- gUCGCGcgGCACGgGCuguacaacgcgcaguUCGUCG-CCCu -3'
miRNA:   3'- aAGUGCa-UGUGCgCG---------------AGCAGCuGGGc -5'
23740 5' -56.3 NC_005261.1 + 54746 0.66 0.899872
Target:  5'- --gACGaACGCGCGCUCGaUCGcCgCCa -3'
miRNA:   3'- aagUGCaUGUGCGCGAGC-AGCuG-GGc -5'
23740 5' -56.3 NC_005261.1 + 66736 0.66 0.899872
Target:  5'- cUUCACcauguaguuGUGCACGgGCUgGUCcaccggguguGGCCCGu -3'
miRNA:   3'- -AAGUG---------CAUGUGCgCGAgCAG----------CUGGGC- -5'
23740 5' -56.3 NC_005261.1 + 49226 0.66 0.89335
Target:  5'- --gGCGcccaGCGCGCGCagGUCGGCCg- -3'
miRNA:   3'- aagUGCa---UGUGCGCGagCAGCUGGgc -5'
23740 5' -56.3 NC_005261.1 + 11890 0.66 0.89335
Target:  5'- -cCGCccGCACGCGCgcccgccgCGggccCGGCCCGg -3'
miRNA:   3'- aaGUGcaUGUGCGCGa-------GCa---GCUGGGC- -5'
23740 5' -56.3 NC_005261.1 + 106648 0.66 0.89335
Target:  5'- --gGCG-ACGuCGCGCUCGcCGGCgCGg -3'
miRNA:   3'- aagUGCaUGU-GCGCGAGCaGCUGgGC- -5'
23740 5' -56.3 NC_005261.1 + 60733 0.66 0.89335
Target:  5'- -cCGCGUGCuCGUGCUaCGUCcucaacaaGCCCGu -3'
miRNA:   3'- aaGUGCAUGuGCGCGA-GCAGc-------UGGGC- -5'
23740 5' -56.3 NC_005261.1 + 1827 0.66 0.89335
Target:  5'- -gCGCGUaagcggccucgGCGCGCGCgaaggCGcCGgGCCCGa -3'
miRNA:   3'- aaGUGCA-----------UGUGCGCGa----GCaGC-UGGGC- -5'
23740 5' -56.3 NC_005261.1 + 38283 0.66 0.8866
Target:  5'- -gCugGUGCACGCGg-UGcUGGCCCGc -3'
miRNA:   3'- aaGugCAUGUGCGCgaGCaGCUGGGC- -5'
23740 5' -56.3 NC_005261.1 + 135076 0.66 0.8866
Target:  5'- uUUC-CGgcgGCGgGCUCG-CGGCCCGg -3'
miRNA:   3'- -AAGuGCaugUGCgCGAGCaGCUGGGC- -5'
23740 5' -56.3 NC_005261.1 + 30249 0.66 0.8866
Target:  5'- -gCGCgGUACucgACGCGCggcgCGgCGGCCCGc -3'
miRNA:   3'- aaGUG-CAUG---UGCGCGa---GCaGCUGGGC- -5'
23740 5' -56.3 NC_005261.1 + 106978 0.66 0.879624
Target:  5'- -gCGCGcGCGcCGCGCaccgCGUCGGCCa- -3'
miRNA:   3'- aaGUGCaUGU-GCGCGa---GCAGCUGGgc -5'
23740 5' -56.3 NC_005261.1 + 11844 0.66 0.879624
Target:  5'- -cCGCGgGCGCGCGUUCG-CGAgCgCGa -3'
miRNA:   3'- aaGUGCaUGUGCGCGAGCaGCUgG-GC- -5'
23740 5' -56.3 NC_005261.1 + 73790 0.66 0.879624
Target:  5'- --gACGUGCGCGCgGCg-GUCGGCgCGc -3'
miRNA:   3'- aagUGCAUGUGCG-CGagCAGCUGgGC- -5'
23740 5' -56.3 NC_005261.1 + 107649 0.66 0.879624
Target:  5'- -cCGCGcUGCGCGCGCaaacucCG-CGGCCCc -3'
miRNA:   3'- aaGUGC-AUGUGCGCGa-----GCaGCUGGGc -5'
23740 5' -56.3 NC_005261.1 + 39894 0.66 0.878203
Target:  5'- -gCGCGgcugugcagcugGCGCGCGCggcCGUCGccACCCa -3'
miRNA:   3'- aaGUGCa-----------UGUGCGCGa--GCAGC--UGGGc -5'
23740 5' -56.3 NC_005261.1 + 102246 0.66 0.877489
Target:  5'- gUCGCccGCuGCGCGCUCGccuccagcgcccggUCGGCCUGc -3'
miRNA:   3'- aAGUGcaUG-UGCGCGAGC--------------AGCUGGGC- -5'
23740 5' -56.3 NC_005261.1 + 66447 0.66 0.872429
Target:  5'- -gCGCG-GCGCGCGC-CGcCGGuCCCGc -3'
miRNA:   3'- aaGUGCaUGUGCGCGaGCaGCU-GGGC- -5'
23740 5' -56.3 NC_005261.1 + 131480 0.66 0.865019
Target:  5'- -cCGCGa--GCGCGC-CGUCGACgCCu -3'
miRNA:   3'- aaGUGCaugUGCGCGaGCAGCUG-GGc -5'
23740 5' -56.3 NC_005261.1 + 95711 0.66 0.865019
Target:  5'- -gCGCGgGCuCGCGCUCG--GGCCCGc -3'
miRNA:   3'- aaGUGCaUGuGCGCGAGCagCUGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.