miRNA display CGI


Results 1 - 20 of 310 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23744 5' -60.3 NC_005261.1 + 129618 0.66 0.770351
Target:  5'- cGGCGGgGuCGGgcGCCuuUGCa-GGCGGc -3'
miRNA:   3'- -CCGCCgC-GCCaaCGGc-AUGagCCGCC- -5'
23744 5' -60.3 NC_005261.1 + 49168 0.66 0.770351
Target:  5'- aGGCGGCcacgGCGGg----GUGCUCGGCc- -3'
miRNA:   3'- -CCGCCG----CGCCaacggCAUGAGCCGcc -5'
23744 5' -60.3 NC_005261.1 + 83843 0.66 0.770351
Target:  5'- uGGCGGgcCGCGGccccGCUGgGCUgGGcCGGg -3'
miRNA:   3'- -CCGCC--GCGCCaa--CGGCaUGAgCC-GCC- -5'
23744 5' -60.3 NC_005261.1 + 102426 0.66 0.770351
Target:  5'- cGCuGCGCGGccGCCuc-CUCGGCGc -3'
miRNA:   3'- cCGcCGCGCCaaCGGcauGAGCCGCc -5'
23744 5' -60.3 NC_005261.1 + 28879 0.66 0.770351
Target:  5'- uGCGGCGCGGacGCCGccgccUGCgcccaacGCGGa -3'
miRNA:   3'- cCGCCGCGCCaaCGGC-----AUGagc----CGCC- -5'
23744 5' -60.3 NC_005261.1 + 37008 0.66 0.770351
Target:  5'- gGGCuGCGCGGg-GCCaGUuuGCgggGGCGGg -3'
miRNA:   3'- -CCGcCGCGCCaaCGG-CA--UGag-CCGCC- -5'
23744 5' -60.3 NC_005261.1 + 58235 0.66 0.770351
Target:  5'- cGGCGGCGgGGUccucggccaUGCCGcGC-CGcGCc- -3'
miRNA:   3'- -CCGCCGCgCCA---------ACGGCaUGaGC-CGcc -5'
23744 5' -60.3 NC_005261.1 + 53945 0.66 0.770351
Target:  5'- cGCGGCGC----GCCGcGCUC-GCGGg -3'
miRNA:   3'- cCGCCGCGccaaCGGCaUGAGcCGCC- -5'
23744 5' -60.3 NC_005261.1 + 56423 0.66 0.770351
Target:  5'- cGCGGCGCacccGCC-UGCggaggCGGCGGc -3'
miRNA:   3'- cCGCCGCGccaaCGGcAUGa----GCCGCC- -5'
23744 5' -60.3 NC_005261.1 + 58986 0.66 0.769446
Target:  5'- aGGCcuccacgGGCgGCGGUgcGCCGgGCUCGcccaGCGGc -3'
miRNA:   3'- -CCG-------CCG-CGCCAa-CGGCaUGAGC----CGCC- -5'
23744 5' -60.3 NC_005261.1 + 129741 0.66 0.766727
Target:  5'- gGGCGGCGgGGcccggccUUcagcaccggcgaccGCCGgGCUCGGCc- -3'
miRNA:   3'- -CCGCCGCgCC-------AA--------------CGGCaUGAGCCGcc -5'
23744 5' -60.3 NC_005261.1 + 33036 0.66 0.761258
Target:  5'- uGCGGagcgucCGCGGaggGCCaggACUCGGCGc -3'
miRNA:   3'- cCGCC------GCGCCaa-CGGca-UGAGCCGCc -5'
23744 5' -60.3 NC_005261.1 + 109122 0.66 0.761258
Target:  5'- gGGCGGCGg---UGUCGUGCgCGGCc- -3'
miRNA:   3'- -CCGCCGCgccaACGGCAUGaGCCGcc -5'
23744 5' -60.3 NC_005261.1 + 70887 0.66 0.761258
Target:  5'- cGGCGGUGCacaugGCCGUgcACUUGcGCGc -3'
miRNA:   3'- -CCGCCGCGccaa-CGGCA--UGAGC-CGCc -5'
23744 5' -60.3 NC_005261.1 + 82127 0.66 0.761258
Target:  5'- uGGCguccgaGGCGCGGUUGuccaccaCCGUGCccgcgccagcaagcgCGGCGcGg -3'
miRNA:   3'- -CCG------CCGCGCCAAC-------GGCAUGa--------------GCCGC-C- -5'
23744 5' -60.3 NC_005261.1 + 84305 0.66 0.761258
Target:  5'- cGGCGGCGCcgaaggcguaGGUcgcguccgggGCCGcGCUCGcGCa- -3'
miRNA:   3'- -CCGCCGCG----------CCAa---------CGGCaUGAGC-CGcc -5'
23744 5' -60.3 NC_005261.1 + 127854 0.66 0.761258
Target:  5'- gGGCGGuCGCGGc-GCCaggGCaCGaGCGGg -3'
miRNA:   3'- -CCGCC-GCGCCaaCGGca-UGaGC-CGCC- -5'
23744 5' -60.3 NC_005261.1 + 99089 0.66 0.761258
Target:  5'- gGGCGGCGCGGcgcgcaGCgGcuUGCUC-GCGa -3'
miRNA:   3'- -CCGCCGCGCCaa----CGgC--AUGAGcCGCc -5'
23744 5' -60.3 NC_005261.1 + 60158 0.66 0.761258
Target:  5'- uGCaGGCGCcGcUGCCGUggaagcgcgucuGCgccgCGGCGGa -3'
miRNA:   3'- cCG-CCGCGcCaACGGCA------------UGa---GCCGCC- -5'
23744 5' -60.3 NC_005261.1 + 46992 0.66 0.761258
Target:  5'- cGGCaGCGCGcGccgcGCCGccGCgaugCGGCGGu -3'
miRNA:   3'- -CCGcCGCGC-Caa--CGGCa-UGa---GCCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.