miRNA display CGI


Results 1 - 20 of 122 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23753 3' -55.6 NC_005261.1 + 69225 0.66 0.921948
Target:  5'- aGCUGUGCGcgcugGGGCGguucGccGAGGCGc -3'
miRNA:   3'- gCGGCGCGCa----UCCGCaa--CuaCUUCGC- -5'
23753 3' -55.6 NC_005261.1 + 90737 0.66 0.916261
Target:  5'- gGCCGCGCcugAGGCGc---UGgcGCGg -3'
miRNA:   3'- gCGGCGCGca-UCCGCaacuACuuCGC- -5'
23753 3' -55.6 NC_005261.1 + 31683 0.66 0.916261
Target:  5'- cCGCgGCGCGgcGGCGgcugaucgUGAUcGAcGCc -3'
miRNA:   3'- -GCGgCGCGCauCCGCa-------ACUA-CUuCGc -5'
23753 3' -55.6 NC_005261.1 + 49249 0.66 0.916261
Target:  5'- cCGCCGcCGCGgcGGCGUc---GgcGCGc -3'
miRNA:   3'- -GCGGC-GCGCauCCGCAacuaCuuCGC- -5'
23753 3' -55.6 NC_005261.1 + 111670 0.66 0.916261
Target:  5'- gCGCCGCgGUGgcGGCGUacgucggcGAUGucGUGg -3'
miRNA:   3'- -GCGGCG-CGCauCCGCAa-------CUACuuCGC- -5'
23753 3' -55.6 NC_005261.1 + 87427 0.66 0.916261
Target:  5'- gCGCCG-GCGaAGGCGccGAagccGAAGCGc -3'
miRNA:   3'- -GCGGCgCGCaUCCGCaaCUa---CUUCGC- -5'
23753 3' -55.6 NC_005261.1 + 129546 0.66 0.915679
Target:  5'- aCGCCGCaaggugcaagacgGCG--GGCGUaGAggagGAGGCGg -3'
miRNA:   3'- -GCGGCG-------------CGCauCCGCAaCUa---CUUCGC- -5'
23753 3' -55.6 NC_005261.1 + 14170 0.66 0.910334
Target:  5'- aCGgCGCGCGUcucgGGGCGcgGGUcAGGCc -3'
miRNA:   3'- -GCgGCGCGCA----UCCGCaaCUAcUUCGc -5'
23753 3' -55.6 NC_005261.1 + 69306 0.66 0.910334
Target:  5'- gCGCCG-GUGgcGGCGggagcgggGGUGAcGGCGa -3'
miRNA:   3'- -GCGGCgCGCauCCGCaa------CUACU-UCGC- -5'
23753 3' -55.6 NC_005261.1 + 28818 0.66 0.910334
Target:  5'- cCGCCGC-CGaagccgAGGCGgccgcgGcUGAGGCGg -3'
miRNA:   3'- -GCGGCGcGCa-----UCCGCaa----CuACUUCGC- -5'
23753 3' -55.6 NC_005261.1 + 3827 0.66 0.910334
Target:  5'- uGCCGCGgGcccGGGCGcUGgcGGcAGCGg -3'
miRNA:   3'- gCGGCGCgCa--UCCGCaACuaCU-UCGC- -5'
23753 3' -55.6 NC_005261.1 + 35058 0.66 0.907896
Target:  5'- gGCCGCGCGgcGGCGgucucc--GCGc -3'
miRNA:   3'- gCGGCGCGCauCCGCaacuacuuCGC- -5'
23753 3' -55.6 NC_005261.1 + 123169 0.66 0.904168
Target:  5'- gGCgGgCGCGcGGGCGUgguggcUGGUGuGGGCGg -3'
miRNA:   3'- gCGgC-GCGCaUCCGCA------ACUAC-UUCGC- -5'
23753 3' -55.6 NC_005261.1 + 96612 0.66 0.904168
Target:  5'- aCGUCGCGCGUGGcGCGcaGccGccGGGCGa -3'
miRNA:   3'- -GCGGCGCGCAUC-CGCaaCuaC--UUCGC- -5'
23753 3' -55.6 NC_005261.1 + 59493 0.66 0.902273
Target:  5'- cCGCCGCGCcagcGGCGgcGGucgcacgcgcgcccUGGAGCa -3'
miRNA:   3'- -GCGGCGCGcau-CCGCaaCU--------------ACUUCGc -5'
23753 3' -55.6 NC_005261.1 + 76187 0.66 0.897767
Target:  5'- aGCgGgGCcUGGGCGUgcUGAUGcAGCa -3'
miRNA:   3'- gCGgCgCGcAUCCGCA--ACUACuUCGc -5'
23753 3' -55.6 NC_005261.1 + 104994 0.66 0.897767
Target:  5'- gCGCCcaGCGCG--GGCGgcGGUcGggGCGc -3'
miRNA:   3'- -GCGG--CGCGCauCCGCaaCUA-CuuCGC- -5'
23753 3' -55.6 NC_005261.1 + 15150 0.66 0.897767
Target:  5'- cCGCCGUccgcgguggGgGUGGGCGUaGcgGcGGCGg -3'
miRNA:   3'- -GCGGCG---------CgCAUCCGCAaCuaCuUCGC- -5'
23753 3' -55.6 NC_005261.1 + 43639 0.66 0.897767
Target:  5'- gCGCC-CGUGUGGcGCGgcGGUGAcGUGc -3'
miRNA:   3'- -GCGGcGCGCAUC-CGCaaCUACUuCGC- -5'
23753 3' -55.6 NC_005261.1 + 1823 0.66 0.897767
Target:  5'- aGCCGCGCGUAaGCGgccucGgcGCGc -3'
miRNA:   3'- gCGGCGCGCAUcCGCaacuaCuuCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.