miRNA display CGI


Results 1 - 20 of 139 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23753 5' -57.9 NC_005261.1 + 58794 0.66 0.812313
Target:  5'- aGCGCGCgCAGGaaggccggcacgcgCCGCGCCa--CGUCc -3'
miRNA:   3'- aCGCGUG-GUCCa-------------GGUGCGGgaaGUAG- -5'
23753 5' -57.9 NC_005261.1 + 50861 0.66 0.808796
Target:  5'- -uCGC-CCAGGUCgGCGCCUUcgCcgCg -3'
miRNA:   3'- acGCGuGGUCCAGgUGCGGGAa-GuaG- -5'
23753 5' -57.9 NC_005261.1 + 50520 0.66 0.808796
Target:  5'- aGCGCAgCAGGgCCGucgucuUGCCCgagccCAUCg -3'
miRNA:   3'- aCGCGUgGUCCaGGU------GCGGGaa---GUAG- -5'
23753 5' -57.9 NC_005261.1 + 15278 0.66 0.808796
Target:  5'- gGCGcCGCCGGGgcgcgcggUCGCGgCCUccgggUCGUCg -3'
miRNA:   3'- aCGC-GUGGUCCa-------GGUGCgGGA-----AGUAG- -5'
23753 5' -57.9 NC_005261.1 + 47597 0.66 0.808796
Target:  5'- cGCGCGCgAGGgagCCGCcCCCUgCGg- -3'
miRNA:   3'- aCGCGUGgUCCa--GGUGcGGGAaGUag -5'
23753 5' -57.9 NC_005261.1 + 5834 0.66 0.808796
Target:  5'- aUGCGCGCCGGGUUacgGCGgCCg----- -3'
miRNA:   3'- -ACGCGUGGUCCAGg--UGCgGGaaguag -5'
23753 5' -57.9 NC_005261.1 + 103127 0.66 0.808796
Target:  5'- aGCGCGcCCGGGUUCuccaGCGCCUcgCGg- -3'
miRNA:   3'- aCGCGU-GGUCCAGG----UGCGGGaaGUag -5'
23753 5' -57.9 NC_005261.1 + 10244 0.66 0.808796
Target:  5'- cGCGCACUcgccgccgcGGG-CCugGCgCCUUCu-- -3'
miRNA:   3'- aCGCGUGG---------UCCaGGugCG-GGAAGuag -5'
23753 5' -57.9 NC_005261.1 + 4414 0.66 0.79989
Target:  5'- cGCGCuGCCGGG-CCAgGCCUcgccggagggCGUCa -3'
miRNA:   3'- aCGCG-UGGUCCaGGUgCGGGaa--------GUAG- -5'
23753 5' -57.9 NC_005261.1 + 60420 0.66 0.79989
Target:  5'- cGgGC-CCGGGgccgCCGCGCUCg-CGUCg -3'
miRNA:   3'- aCgCGuGGUCCa---GGUGCGGGaaGUAG- -5'
23753 5' -57.9 NC_005261.1 + 50664 0.66 0.79989
Target:  5'- cGCGCucgcCCAaGUCCGCGCCgUauaaCAUCc -3'
miRNA:   3'- aCGCGu---GGUcCAGGUGCGGgAa---GUAG- -5'
23753 5' -57.9 NC_005261.1 + 105378 0.66 0.794473
Target:  5'- gGCGCGCgCGGGUgcgcgcugaCCACGCgCCgcucgacguagggcUCGUCg -3'
miRNA:   3'- aCGCGUG-GUCCA---------GGUGCG-GGa-------------AGUAG- -5'
23753 5' -57.9 NC_005261.1 + 126537 0.66 0.790832
Target:  5'- cGcCGCGCCucGG-CCACGCgCCgcCGUCg -3'
miRNA:   3'- aC-GCGUGGu-CCaGGUGCG-GGaaGUAG- -5'
23753 5' -57.9 NC_005261.1 + 101066 0.66 0.790832
Target:  5'- cGCGCAgccCCAGcaCCACGCCCg----- -3'
miRNA:   3'- aCGCGU---GGUCcaGGUGCGGGaaguag -5'
23753 5' -57.9 NC_005261.1 + 74764 0.66 0.790832
Target:  5'- aGCGCGCCacaggcgcggAGGUCgACGCgCg-CAUCc -3'
miRNA:   3'- aCGCGUGG----------UCCAGgUGCGgGaaGUAG- -5'
23753 5' -57.9 NC_005261.1 + 19265 0.66 0.790832
Target:  5'- aGCGCGCgCGGGU--ACGCCag-CGUCu -3'
miRNA:   3'- aCGCGUG-GUCCAggUGCGGgaaGUAG- -5'
23753 5' -57.9 NC_005261.1 + 53148 0.66 0.790832
Target:  5'- cGCGCGCCG---UCGCGCCgCcgUCGUCg -3'
miRNA:   3'- aCGCGUGGUccaGGUGCGG-Ga-AGUAG- -5'
23753 5' -57.9 NC_005261.1 + 73739 0.66 0.790832
Target:  5'- uUGCGCGCgGGGguccggugCCACGgCCgCUUCu-- -3'
miRNA:   3'- -ACGCGUGgUCCa-------GGUGC-GG-GAAGuag -5'
23753 5' -57.9 NC_005261.1 + 98261 0.66 0.790832
Target:  5'- gGCGCGUCAGGcggcgcgcgcguUCgACGCCCggcgCGUCc -3'
miRNA:   3'- aCGCGUGGUCC------------AGgUGCGGGaa--GUAG- -5'
23753 5' -57.9 NC_005261.1 + 130858 0.66 0.790832
Target:  5'- cGCGCccgGCCGGGcgCCGCGgCCUggCcUCg -3'
miRNA:   3'- aCGCG---UGGUCCa-GGUGCgGGAa-GuAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.