Results 1 - 20 of 139 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23753 | 5' | -57.9 | NC_005261.1 | + | 58794 | 0.66 | 0.812313 |
Target: 5'- aGCGCGCgCAGGaaggccggcacgcgCCGCGCCa--CGUCc -3' miRNA: 3'- aCGCGUG-GUCCa-------------GGUGCGGgaaGUAG- -5' |
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23753 | 5' | -57.9 | NC_005261.1 | + | 50861 | 0.66 | 0.808796 |
Target: 5'- -uCGC-CCAGGUCgGCGCCUUcgCcgCg -3' miRNA: 3'- acGCGuGGUCCAGgUGCGGGAa-GuaG- -5' |
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23753 | 5' | -57.9 | NC_005261.1 | + | 50520 | 0.66 | 0.808796 |
Target: 5'- aGCGCAgCAGGgCCGucgucuUGCCCgagccCAUCg -3' miRNA: 3'- aCGCGUgGUCCaGGU------GCGGGaa---GUAG- -5' |
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23753 | 5' | -57.9 | NC_005261.1 | + | 15278 | 0.66 | 0.808796 |
Target: 5'- gGCGcCGCCGGGgcgcgcggUCGCGgCCUccgggUCGUCg -3' miRNA: 3'- aCGC-GUGGUCCa-------GGUGCgGGA-----AGUAG- -5' |
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23753 | 5' | -57.9 | NC_005261.1 | + | 47597 | 0.66 | 0.808796 |
Target: 5'- cGCGCGCgAGGgagCCGCcCCCUgCGg- -3' miRNA: 3'- aCGCGUGgUCCa--GGUGcGGGAaGUag -5' |
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23753 | 5' | -57.9 | NC_005261.1 | + | 5834 | 0.66 | 0.808796 |
Target: 5'- aUGCGCGCCGGGUUacgGCGgCCg----- -3' miRNA: 3'- -ACGCGUGGUCCAGg--UGCgGGaaguag -5' |
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23753 | 5' | -57.9 | NC_005261.1 | + | 103127 | 0.66 | 0.808796 |
Target: 5'- aGCGCGcCCGGGUUCuccaGCGCCUcgCGg- -3' miRNA: 3'- aCGCGU-GGUCCAGG----UGCGGGaaGUag -5' |
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23753 | 5' | -57.9 | NC_005261.1 | + | 10244 | 0.66 | 0.808796 |
Target: 5'- cGCGCACUcgccgccgcGGG-CCugGCgCCUUCu-- -3' miRNA: 3'- aCGCGUGG---------UCCaGGugCG-GGAAGuag -5' |
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23753 | 5' | -57.9 | NC_005261.1 | + | 4414 | 0.66 | 0.79989 |
Target: 5'- cGCGCuGCCGGG-CCAgGCCUcgccggagggCGUCa -3' miRNA: 3'- aCGCG-UGGUCCaGGUgCGGGaa--------GUAG- -5' |
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23753 | 5' | -57.9 | NC_005261.1 | + | 60420 | 0.66 | 0.79989 |
Target: 5'- cGgGC-CCGGGgccgCCGCGCUCg-CGUCg -3' miRNA: 3'- aCgCGuGGUCCa---GGUGCGGGaaGUAG- -5' |
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23753 | 5' | -57.9 | NC_005261.1 | + | 50664 | 0.66 | 0.79989 |
Target: 5'- cGCGCucgcCCAaGUCCGCGCCgUauaaCAUCc -3' miRNA: 3'- aCGCGu---GGUcCAGGUGCGGgAa---GUAG- -5' |
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23753 | 5' | -57.9 | NC_005261.1 | + | 105378 | 0.66 | 0.794473 |
Target: 5'- gGCGCGCgCGGGUgcgcgcugaCCACGCgCCgcucgacguagggcUCGUCg -3' miRNA: 3'- aCGCGUG-GUCCA---------GGUGCG-GGa-------------AGUAG- -5' |
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23753 | 5' | -57.9 | NC_005261.1 | + | 126537 | 0.66 | 0.790832 |
Target: 5'- cGcCGCGCCucGG-CCACGCgCCgcCGUCg -3' miRNA: 3'- aC-GCGUGGu-CCaGGUGCG-GGaaGUAG- -5' |
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23753 | 5' | -57.9 | NC_005261.1 | + | 101066 | 0.66 | 0.790832 |
Target: 5'- cGCGCAgccCCAGcaCCACGCCCg----- -3' miRNA: 3'- aCGCGU---GGUCcaGGUGCGGGaaguag -5' |
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23753 | 5' | -57.9 | NC_005261.1 | + | 74764 | 0.66 | 0.790832 |
Target: 5'- aGCGCGCCacaggcgcggAGGUCgACGCgCg-CAUCc -3' miRNA: 3'- aCGCGUGG----------UCCAGgUGCGgGaaGUAG- -5' |
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23753 | 5' | -57.9 | NC_005261.1 | + | 19265 | 0.66 | 0.790832 |
Target: 5'- aGCGCGCgCGGGU--ACGCCag-CGUCu -3' miRNA: 3'- aCGCGUG-GUCCAggUGCGGgaaGUAG- -5' |
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23753 | 5' | -57.9 | NC_005261.1 | + | 53148 | 0.66 | 0.790832 |
Target: 5'- cGCGCGCCG---UCGCGCCgCcgUCGUCg -3' miRNA: 3'- aCGCGUGGUccaGGUGCGG-Ga-AGUAG- -5' |
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23753 | 5' | -57.9 | NC_005261.1 | + | 73739 | 0.66 | 0.790832 |
Target: 5'- uUGCGCGCgGGGguccggugCCACGgCCgCUUCu-- -3' miRNA: 3'- -ACGCGUGgUCCa-------GGUGC-GG-GAAGuag -5' |
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23753 | 5' | -57.9 | NC_005261.1 | + | 98261 | 0.66 | 0.790832 |
Target: 5'- gGCGCGUCAGGcggcgcgcgcguUCgACGCCCggcgCGUCc -3' miRNA: 3'- aCGCGUGGUCC------------AGgUGCGGGaa--GUAG- -5' |
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23753 | 5' | -57.9 | NC_005261.1 | + | 130858 | 0.66 | 0.790832 |
Target: 5'- cGCGCccgGCCGGGcgCCGCGgCCUggCcUCg -3' miRNA: 3'- aCGCG---UGGUCCa-GGUGCgGGAa-GuAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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