miRNA display CGI


Results 1 - 20 of 259 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23754 5' -63.3 NC_005261.1 + 49288 0.66 0.603368
Target:  5'- aGGCGcagaagcccgcGGCGGu-GAGCGCCGCgcagcccuCGAGc -3'
miRNA:   3'- cCCGC-----------CCGCCuuCUCGCGGCG--------GCUCu -5'
23754 5' -63.3 NC_005261.1 + 121709 0.66 0.603368
Target:  5'- aGGCGuagacgccgacGGCGGggGAGaa--GCCGAGGu -3'
miRNA:   3'- cCCGC-----------CCGCCuuCUCgcggCGGCUCU- -5'
23754 5' -63.3 NC_005261.1 + 123278 0.66 0.603368
Target:  5'- aGGuGCGGGUGGuccgccAGCGCCuCCGcGAu -3'
miRNA:   3'- -CC-CGCCCGCCuuc---UCGCGGcGGCuCU- -5'
23754 5' -63.3 NC_005261.1 + 83377 0.66 0.603368
Target:  5'- cGGCGaGCGcGgcGAGCGCggccucgGCCGAGGc -3'
miRNA:   3'- cCCGCcCGC-CuuCUCGCGg------CGGCUCU- -5'
23754 5' -63.3 NC_005261.1 + 5819 0.66 0.603368
Target:  5'- cGGCaGcGGCGGccGAugcGCGCCggguuacggcgGCCGAGAg -3'
miRNA:   3'- cCCG-C-CCGCCuuCU---CGCGG-----------CGGCUCU- -5'
23754 5' -63.3 NC_005261.1 + 133262 0.66 0.603368
Target:  5'- aGGCGGcGCGcGAguaccAGGGCGCCGgCGc-- -3'
miRNA:   3'- cCCGCC-CGC-CU-----UCUCGCGGCgGCucu -5'
23754 5' -63.3 NC_005261.1 + 39793 0.66 0.603368
Target:  5'- cGGgGGGCGGc---GCgGCCGCCGGc- -3'
miRNA:   3'- cCCgCCCGCCuucuCG-CGGCGGCUcu -5'
23754 5' -63.3 NC_005261.1 + 115414 0.66 0.603368
Target:  5'- -cGCGGGCGGcagccGGGGcCGCgGcCCGAGc -3'
miRNA:   3'- ccCGCCCGCCu----UCUC-GCGgC-GGCUCu -5'
23754 5' -63.3 NC_005261.1 + 32231 0.66 0.603368
Target:  5'- cGGCGGuggccuucugcGCGGccgcgcugcuGGAGcCGCaCGCCGAGGc -3'
miRNA:   3'- cCCGCC-----------CGCCu---------UCUC-GCG-GCGGCUCU- -5'
23754 5' -63.3 NC_005261.1 + 27745 0.66 0.603368
Target:  5'- -cGCGGGCaGAGGAGCcgagcuagccaGCCaGCCGGc- -3'
miRNA:   3'- ccCGCCCGcCUUCUCG-----------CGG-CGGCUcu -5'
23754 5' -63.3 NC_005261.1 + 22579 0.66 0.603368
Target:  5'- gGGGagaGcGGCGGAGGcGGCGCaCGCUGc-- -3'
miRNA:   3'- -CCCg--C-CCGCCUUC-UCGCG-GCGGCucu -5'
23754 5' -63.3 NC_005261.1 + 94877 0.66 0.59366
Target:  5'- cGGGCGGGCGGcccgcgugcAGccacacGCGCgCGCUgGAGGc -3'
miRNA:   3'- -CCCGCCCGCCu--------UCu-----CGCG-GCGG-CUCU- -5'
23754 5' -63.3 NC_005261.1 + 23717 0.66 0.59366
Target:  5'- cGGGUGGcaaGCGGguGGccGCGCCGaggcgcguCCGGGAg -3'
miRNA:   3'- -CCCGCC---CGCCuuCU--CGCGGC--------GGCUCU- -5'
23754 5' -63.3 NC_005261.1 + 52986 0.66 0.59366
Target:  5'- cGGCaGGCGGggGcGGCGCCcaggcGUCGGc- -3'
miRNA:   3'- cCCGcCCGCCuuC-UCGCGG-----CGGCUcu -5'
23754 5' -63.3 NC_005261.1 + 23532 0.66 0.59366
Target:  5'- cGGGCGagcggcagaGGCGGcAGGAGCcGUCGCagguGGGGc -3'
miRNA:   3'- -CCCGC---------CCGCC-UUCUCG-CGGCGg---CUCU- -5'
23754 5' -63.3 NC_005261.1 + 102954 0.66 0.59366
Target:  5'- cGGC-GGCGGccgcGGGCGCCGCgGGc- -3'
miRNA:   3'- cCCGcCCGCCuu--CUCGCGGCGgCUcu -5'
23754 5' -63.3 NC_005261.1 + 60053 0.66 0.59366
Target:  5'- cGGC-GGCGGcgAAGAGCGgCgGCCGGu- -3'
miRNA:   3'- cCCGcCCGCC--UUCUCGC-GgCGGCUcu -5'
23754 5' -63.3 NC_005261.1 + 98301 0.66 0.59366
Target:  5'- -cGCGGccuCGGggGcgGGCGCCGCCGc-- -3'
miRNA:   3'- ccCGCCc--GCCuuC--UCGCGGCGGCucu -5'
23754 5' -63.3 NC_005261.1 + 30541 0.66 0.59366
Target:  5'- aGGa-GGacgaGGAAGAGgccgcCGCCGCCGGGGc -3'
miRNA:   3'- cCCgcCCg---CCUUCUC-----GCGGCGGCUCU- -5'
23754 5' -63.3 NC_005261.1 + 65821 0.66 0.59269
Target:  5'- cGGGCGgcGGCGcGAAgcugcccGAGUGCCG-CGAGu -3'
miRNA:   3'- -CCCGC--CCGC-CUU-------CUCGCGGCgGCUCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.