miRNA display CGI


Results 1 - 20 of 603 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23756 5' -63.3 NC_005261.1 + 61973 0.66 0.632459
Target:  5'- -aGCCGGGu-CGCCgAGCugauccaggCCGccagCGCCCc -3'
miRNA:   3'- ggCGGCCCuuGCGG-UCG---------GGCa---GCGGG- -5'
23756 5' -63.3 NC_005261.1 + 120359 0.66 0.632459
Target:  5'- gCGCUGGacgguGCGCgaCGGCgCCG-CGCCCu -3'
miRNA:   3'- gGCGGCCcu---UGCG--GUCG-GGCaGCGGG- -5'
23756 5' -63.3 NC_005261.1 + 110331 0.66 0.632459
Target:  5'- gCCGCCGcGGACGCgCuGCgCG-CGCaCCu -3'
miRNA:   3'- -GGCGGCcCUUGCG-GuCGgGCaGCG-GG- -5'
23756 5' -63.3 NC_005261.1 + 4396 0.66 0.632459
Target:  5'- gCgGCCGGGcGGCGgCGGCgCGcUGCCg -3'
miRNA:   3'- -GgCGGCCC-UUGCgGUCGgGCaGCGGg -5'
23756 5' -63.3 NC_005261.1 + 6440 0.66 0.632459
Target:  5'- gCgGuCCGGGG--GCCGGCCgGgcUGCCCg -3'
miRNA:   3'- -GgC-GGCCCUugCGGUCGGgCa-GCGGG- -5'
23756 5' -63.3 NC_005261.1 + 24049 0.66 0.632459
Target:  5'- gCGUCcuugGGuGGGCGCCcGCCCGagugggcccCGCCCa -3'
miRNA:   3'- gGCGG----CC-CUUGCGGuCGGGCa--------GCGGG- -5'
23756 5' -63.3 NC_005261.1 + 51908 0.66 0.632459
Target:  5'- aUCGcCCGGGcGCGCagcggccgCGGCCUGguccCGCUCg -3'
miRNA:   3'- -GGC-GGCCCuUGCG--------GUCGGGCa---GCGGG- -5'
23756 5' -63.3 NC_005261.1 + 89289 0.66 0.632459
Target:  5'- cCCGgCGGccgccAACGCCgaGGaCCuCGUCGUCCa -3'
miRNA:   3'- -GGCgGCCc----UUGCGG--UC-GG-GCAGCGGG- -5'
23756 5' -63.3 NC_005261.1 + 20510 0.66 0.632459
Target:  5'- -gGCCGgcuaGGGACGCCGGU-CGUUGUCUc -3'
miRNA:   3'- ggCGGC----CCUUGCGGUCGgGCAGCGGG- -5'
23756 5' -63.3 NC_005261.1 + 31483 0.66 0.632459
Target:  5'- gCCGCCGGuGcGCgGCgGGCUC-UCGCaCCu -3'
miRNA:   3'- -GGCGGCC-CuUG-CGgUCGGGcAGCG-GG- -5'
23756 5' -63.3 NC_005261.1 + 91863 0.66 0.632459
Target:  5'- aCCGCCGGcaccuCGgC-GUCCGUCGCgCu -3'
miRNA:   3'- -GGCGGCCcuu--GCgGuCGGGCAGCGgG- -5'
23756 5' -63.3 NC_005261.1 + 121023 0.66 0.632459
Target:  5'- cCCGCuggcgCGGGAgaaGCGCC-GCCacaCGUCGCg- -3'
miRNA:   3'- -GGCG-----GCCCU---UGCGGuCGG---GCAGCGgg -5'
23756 5' -63.3 NC_005261.1 + 88487 0.66 0.632459
Target:  5'- gCGCCGGaGcGCGCCGcGCUCGacccgCGCUUc -3'
miRNA:   3'- gGCGGCC-CuUGCGGU-CGGGCa----GCGGG- -5'
23756 5' -63.3 NC_005261.1 + 125872 0.66 0.632459
Target:  5'- uCgGCCGGGGcgGCGCCcuuGGCUgaaGgCGCCUg -3'
miRNA:   3'- -GgCGGCCCU--UGCGG---UCGGg--CaGCGGG- -5'
23756 5' -63.3 NC_005261.1 + 50034 0.66 0.631494
Target:  5'- gCCGCCGcGcGAcggugcaGCGCCgccgcgagaAGCCCGcUGCCg -3'
miRNA:   3'- -GGCGGC-C-CU-------UGCGG---------UCGGGCaGCGGg -5'
23756 5' -63.3 NC_005261.1 + 132051 0.66 0.629566
Target:  5'- aCC-CCGGGGAgGUggCGGCcgaggucgcggccgCCGUCGCCg -3'
miRNA:   3'- -GGcGGCCCUUgCG--GUCG--------------GGCAGCGGg -5'
23756 5' -63.3 NC_005261.1 + 115936 0.66 0.629566
Target:  5'- gCGCgCGGGGcaggguacucguacGCGcCCAGCaCC-UCGUCCu -3'
miRNA:   3'- gGCG-GCCCU--------------UGC-GGUCG-GGcAGCGGG- -5'
23756 5' -63.3 NC_005261.1 + 102316 0.66 0.62378
Target:  5'- gCGCCGcGGccgcggcgcgcagccGCGCCAGCUCGgccgCGUCg -3'
miRNA:   3'- gGCGGC-CCu--------------UGCGGUCGGGCa---GCGGg -5'
23756 5' -63.3 NC_005261.1 + 90196 0.66 0.622816
Target:  5'- aCGCaGGGAGCGCgGGggCGgcggagCGCCCu -3'
miRNA:   3'- gGCGgCCCUUGCGgUCggGCa-----GCGGG- -5'
23756 5' -63.3 NC_005261.1 + 133283 0.66 0.622816
Target:  5'- gCGCCGG---CGCCcGCCuCGUgGCCg -3'
miRNA:   3'- gGCGGCCcuuGCGGuCGG-GCAgCGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.