miRNA display CGI


Results 1 - 20 of 357 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23759 3' -61.8 NC_005261.1 + 135660 0.66 0.65935
Target:  5'- gGCGCgggCGGcccUCGcucgaggagcucUGcGCCGCGCGGCg- -3'
miRNA:   3'- aCGCGa--GCC---AGU------------AC-CGGUGCGCCGgg -5'
23759 3' -61.8 NC_005261.1 + 64303 0.66 0.65935
Target:  5'- gUGCGCauguuUCGcGUCGcGGCCguagccgugcccGCGUcagGGCCCg -3'
miRNA:   3'- -ACGCG-----AGC-CAGUaCCGG------------UGCG---CCGGG- -5'
23759 3' -61.8 NC_005261.1 + 83366 0.66 0.65935
Target:  5'- gGCGUccacgUCGGcgagCGcGGCgaGCGCGGCCUc -3'
miRNA:   3'- aCGCG-----AGCCa---GUaCCGg-UGCGCCGGG- -5'
23759 3' -61.8 NC_005261.1 + 88361 0.66 0.65935
Target:  5'- gGCGUUCacaUCGgaacGGCCgaGCGCGcGCCCa -3'
miRNA:   3'- aCGCGAGcc-AGUa---CCGG--UGCGC-CGGG- -5'
23759 3' -61.8 NC_005261.1 + 24386 0.66 0.65935
Target:  5'- gUGgGCUC-GUCGgcGGCgGgGCGGUCCu -3'
miRNA:   3'- -ACgCGAGcCAGUa-CCGgUgCGCCGGG- -5'
23759 3' -61.8 NC_005261.1 + 58950 0.66 0.65935
Target:  5'- aGCGCUCGGcCAgcaGcGCCuCG-GcGCCCg -3'
miRNA:   3'- aCGCGAGCCaGUa--C-CGGuGCgC-CGGG- -5'
23759 3' -61.8 NC_005261.1 + 21196 0.66 0.65935
Target:  5'- aGCGCggccgCGGaCGcUGGCCccggccgcgacgGCG-GGCCCg -3'
miRNA:   3'- aCGCGa----GCCaGU-ACCGG------------UGCgCCGGG- -5'
23759 3' -61.8 NC_005261.1 + 87474 0.66 0.65935
Target:  5'- gGCGCgc-GUCA-GGUUcgGCGCGGCCg -3'
miRNA:   3'- aCGCGagcCAGUaCCGG--UGCGCCGGg -5'
23759 3' -61.8 NC_005261.1 + 58295 0.66 0.65935
Target:  5'- cGCGC-CGGg---GGgCGCggggaggggGCGGCCCa -3'
miRNA:   3'- aCGCGaGCCaguaCCgGUG---------CGCCGGG- -5'
23759 3' -61.8 NC_005261.1 + 41465 0.66 0.653423
Target:  5'- gGCGUccUGGUCGcGGCuCugcgaguaguugguaAUGCGGCCCg -3'
miRNA:   3'- aCGCGa-GCCAGUaCCG-G---------------UGCGCCGGG- -5'
23759 3' -61.8 NC_005261.1 + 108917 0.66 0.649468
Target:  5'- gGCGCggGGUCggGGCC-CaGCacGCCCa -3'
miRNA:   3'- aCGCGagCCAGuaCCGGuG-CGc-CGGG- -5'
23759 3' -61.8 NC_005261.1 + 6433 0.66 0.649468
Target:  5'- cGCGagggCGGUCcgggggccGGCCGgGCuGCCCg -3'
miRNA:   3'- aCGCga--GCCAGua------CCGGUgCGcCGGG- -5'
23759 3' -61.8 NC_005261.1 + 98256 0.66 0.649468
Target:  5'- gGUGCggCGcGUCAggcGGCgCGCGCGuucgacGCCCg -3'
miRNA:   3'- aCGCGa-GC-CAGUa--CCG-GUGCGC------CGGG- -5'
23759 3' -61.8 NC_005261.1 + 132632 0.66 0.649468
Target:  5'- gGCGCcgaGGaCGcGGgCGCgGCGGCCCu -3'
miRNA:   3'- aCGCGag-CCaGUaCCgGUG-CGCCGGG- -5'
23759 3' -61.8 NC_005261.1 + 76134 0.66 0.649468
Target:  5'- gGCGCccgucguggaGGUCGUGGCgGCGCacgacGCCg -3'
miRNA:   3'- aCGCGag--------CCAGUACCGgUGCGc----CGGg -5'
23759 3' -61.8 NC_005261.1 + 108165 0.66 0.649468
Target:  5'- aGCGCgUCcGcCA-GGgCGCGCGGCCg -3'
miRNA:   3'- aCGCG-AGcCaGUaCCgGUGCGCCGGg -5'
23759 3' -61.8 NC_005261.1 + 14967 0.66 0.649468
Target:  5'- cGUGCcUGGggcgacugCGcGGCCGCGCcGGCCg -3'
miRNA:   3'- aCGCGaGCCa-------GUaCCGGUGCG-CCGGg -5'
23759 3' -61.8 NC_005261.1 + 3426 0.66 0.649468
Target:  5'- aGCGCgCGGgccagCGUccaggcGGgCGCGCGGgCCg -3'
miRNA:   3'- aCGCGaGCCa----GUA------CCgGUGCGCCgGG- -5'
23759 3' -61.8 NC_005261.1 + 4161 0.66 0.639573
Target:  5'- gGCGCgccagcugcaGGUCcgGGCC-CGCGaGCUu -3'
miRNA:   3'- aCGCGag--------CCAGuaCCGGuGCGC-CGGg -5'
23759 3' -61.8 NC_005261.1 + 450 0.66 0.639573
Target:  5'- cGgGgaCGGg---GGCCGCGaCGGCCg -3'
miRNA:   3'- aCgCgaGCCaguaCCGGUGC-GCCGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.