miRNA display CGI


Results 1 - 20 of 185 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23763 3' -64.6 NC_005261.1 + 17313 0.66 0.550026
Target:  5'- gGCCGgGGUcgcGGcCCGGCcCG-GCCCa -3'
miRNA:   3'- gCGGUgCCA---CCaGGCCGaGCgCGGGc -5'
23763 3' -64.6 NC_005261.1 + 36355 0.66 0.550026
Target:  5'- uGCCGCGGaGGggggagcggaUCUGGCaCGgGCCCc -3'
miRNA:   3'- gCGGUGCCaCC----------AGGCCGaGCgCGGGc -5'
23763 3' -64.6 NC_005261.1 + 105217 0.66 0.550026
Target:  5'- cCGCCGCGcG-GGcCgCGGC-CGCGgCCGu -3'
miRNA:   3'- -GCGGUGC-CaCCaG-GCCGaGCGCgGGC- -5'
23763 3' -64.6 NC_005261.1 + 115467 0.66 0.550026
Target:  5'- cCGCCuCGGUgucGGUCgCgGGCUCG-GCCgCGg -3'
miRNA:   3'- -GCGGuGCCA---CCAG-G-CCGAGCgCGG-GC- -5'
23763 3' -64.6 NC_005261.1 + 126072 0.66 0.550026
Target:  5'- cCGCC-CGccGGcCuCGGCgggCGCGCCCa -3'
miRNA:   3'- -GCGGuGCcaCCaG-GCCGa--GCGCGGGc -5'
23763 3' -64.6 NC_005261.1 + 60702 0.66 0.550026
Target:  5'- aCGCCGCGcGUGGcggcgCaCGGCggugccaccgCGUGCUCGu -3'
miRNA:   3'- -GCGGUGC-CACCa----G-GCCGa---------GCGCGGGC- -5'
23763 3' -64.6 NC_005261.1 + 71611 0.66 0.550026
Target:  5'- cCGCCGCGGc---CCgGGCgCGgGCCCGg -3'
miRNA:   3'- -GCGGUGCCaccaGG-CCGaGCgCGGGC- -5'
23763 3' -64.6 NC_005261.1 + 110230 0.66 0.550026
Target:  5'- aCGCCuccaGcGUGGg-CGGCgcgGCGCCCGg -3'
miRNA:   3'- -GCGGug--C-CACCagGCCGag-CGCGGGC- -5'
23763 3' -64.6 NC_005261.1 + 14528 0.66 0.550026
Target:  5'- aGCCcgGCGGUGG-CgCGGC---CGCCCGg -3'
miRNA:   3'- gCGG--UGCCACCaG-GCCGagcGCGGGC- -5'
23763 3' -64.6 NC_005261.1 + 3827 0.66 0.550026
Target:  5'- uGCCGCGGgcccgggcgcUGGcggcagcggcgCCGGCgccgCGCGgCCGg -3'
miRNA:   3'- gCGGUGCC----------ACCa----------GGCCGa---GCGCgGGC- -5'
23763 3' -64.6 NC_005261.1 + 74441 0.66 0.549086
Target:  5'- gCGCCcccccgGCGGggGGUgggggcgccgcccCCGGCgcggCGUGCCUGg -3'
miRNA:   3'- -GCGG------UGCCa-CCA-------------GGCCGa---GCGCGGGC- -5'
23763 3' -64.6 NC_005261.1 + 93550 0.66 0.548145
Target:  5'- cCGCCcaguagcggucgACGGcGGUgCGGCgggacgcgaucgCGCGCUCGg -3'
miRNA:   3'- -GCGG------------UGCCaCCAgGCCGa-----------GCGCGGGC- -5'
23763 3' -64.6 NC_005261.1 + 52966 0.66 0.54158
Target:  5'- gCGCCGCGccGGUgCGGCgccggcaggcgggggCgGCGCCCa -3'
miRNA:   3'- -GCGGUGCcaCCAgGCCGa--------------G-CGCGGGc -5'
23763 3' -64.6 NC_005261.1 + 33751 0.66 0.540644
Target:  5'- gCGCCGgGGccgGG-CCcGCUCGCgggGCCCGc -3'
miRNA:   3'- -GCGGUgCCa--CCaGGcCGAGCG---CGGGC- -5'
23763 3' -64.6 NC_005261.1 + 104267 0.66 0.540644
Target:  5'- gCGCCGCGGUcucggcGGcugcgCgGGcCUCGCagGCCCGc -3'
miRNA:   3'- -GCGGUGCCA------CCa----GgCC-GAGCG--CGGGC- -5'
23763 3' -64.6 NC_005261.1 + 95755 0.66 0.540644
Target:  5'- cCGCCGcCGG-GGgcgCCGGgagcCUCGCGCgCUGc -3'
miRNA:   3'- -GCGGU-GCCaCCa--GGCC----GAGCGCG-GGC- -5'
23763 3' -64.6 NC_005261.1 + 32228 0.66 0.540644
Target:  5'- cCGCgGCGGUGGccuucugCgCGGC-CGCGCUg- -3'
miRNA:   3'- -GCGgUGCCACCa------G-GCCGaGCGCGGgc -5'
23763 3' -64.6 NC_005261.1 + 75518 0.66 0.540644
Target:  5'- gCGCaCGCcGUGGUCgccgcgcugcagCGGCUgCGCGUCCu -3'
miRNA:   3'- -GCG-GUGcCACCAG------------GCCGA-GCGCGGGc -5'
23763 3' -64.6 NC_005261.1 + 120424 0.66 0.539708
Target:  5'- gGCCugGGcUGGUgaacaugCgCGGCgUGCGCCUGc -3'
miRNA:   3'- gCGGugCC-ACCA-------G-GCCGaGCGCGGGC- -5'
23763 3' -64.6 NC_005261.1 + 73925 0.66 0.539708
Target:  5'- gGCCcgacuGCGuGUGccugcUCCGGCUugcagacgcggggCGCGCCCGg -3'
miRNA:   3'- gCGG-----UGC-CACc----AGGCCGA-------------GCGCGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.