miRNA display CGI


Results 1 - 20 of 239 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23765 5' -52.6 NC_005261.1 + 88626 0.66 0.977106
Target:  5'- cGCUGCUggGCAugucggaggacggcaAGCGCGugGcGGUgCACGu -3'
miRNA:   3'- -CGAUGA--UGU---------------UCGCGCugUaCCG-GUGC- -5'
23765 5' -52.6 NC_005261.1 + 93213 0.66 0.976098
Target:  5'- gGCUccaGCaGCGccAGCGCGGCAaaaaagcGGCCGCc -3'
miRNA:   3'- -CGA---UGaUGU--UCGCGCUGUa------CCGGUGc -5'
23765 5' -52.6 NC_005261.1 + 131066 0.66 0.976098
Target:  5'- cCUGCagGCcguGCGgGACugccUGGCCACGu -3'
miRNA:   3'- cGAUGa-UGuu-CGCgCUGu---ACCGGUGC- -5'
23765 5' -52.6 NC_005261.1 + 17055 0.66 0.976098
Target:  5'- gGCUGCUcgcggccguccuGgAAGgGCGACGggaugGGCC-CGg -3'
miRNA:   3'- -CGAUGA------------UgUUCgCGCUGUa----CCGGuGC- -5'
23765 5' -52.6 NC_005261.1 + 65910 0.66 0.976098
Target:  5'- uGUUGcCUACcAGCGgGuagggcacccGCGUGGCCugGu -3'
miRNA:   3'- -CGAU-GAUGuUCGCgC----------UGUACCGGugC- -5'
23765 5' -52.6 NC_005261.1 + 69341 0.66 0.976098
Target:  5'- aGCgACggagAC-GGCGaCGACGcGGCCGCGc -3'
miRNA:   3'- -CGaUGa---UGuUCGC-GCUGUaCCGGUGC- -5'
23765 5' -52.6 NC_005261.1 + 80194 0.66 0.975059
Target:  5'- aGCUcCUGCAgguacagcuuggccAGCGCGuugcugaGCAUcggccggaaGGCCACGa -3'
miRNA:   3'- -CGAuGAUGU--------------UCGCGC-------UGUA---------CCGGUGC- -5'
23765 5' -52.6 NC_005261.1 + 14038 0.66 0.973438
Target:  5'- aGCgggGCcaUGCGAGCGguccgcaGGCA-GGCCGCGu -3'
miRNA:   3'- -CGa--UG--AUGUUCGCg------CUGUaCCGGUGC- -5'
23765 5' -52.6 NC_005261.1 + 62690 0.66 0.973438
Target:  5'- aGCUGC-ACGcgccGGCGCaGCGUGGCgAgGa -3'
miRNA:   3'- -CGAUGaUGU----UCGCGcUGUACCGgUgC- -5'
23765 5' -52.6 NC_005261.1 + 76175 0.66 0.973438
Target:  5'- cGCUGCagUACGAGCGgGGCcUGGgCGu- -3'
miRNA:   3'- -CGAUG--AUGUUCGCgCUGuACCgGUgc -5'
23765 5' -52.6 NC_005261.1 + 44311 0.66 0.973438
Target:  5'- cGCUGCccGCGGGCGCcgcaGACGgggGGCUggGg -3'
miRNA:   3'- -CGAUGa-UGUUCGCG----CUGUa--CCGGugC- -5'
23765 5' -52.6 NC_005261.1 + 110903 0.66 0.973438
Target:  5'- gGCgACUGCGA-CGCGACGguguuccuGCCGCGc -3'
miRNA:   3'- -CGaUGAUGUUcGCGCUGUac------CGGUGC- -5'
23765 5' -52.6 NC_005261.1 + 121398 0.66 0.973438
Target:  5'- gGCgcCUGCccGAGUGCGACGgcuGCCGCc -3'
miRNA:   3'- -CGauGAUG--UUCGCGCUGUac-CGGUGc -5'
23765 5' -52.6 NC_005261.1 + 51265 0.66 0.973438
Target:  5'- uGCUGCUgucccACAAGauCGcCGuCcUGGCCGCGg -3'
miRNA:   3'- -CGAUGA-----UGUUC--GC-GCuGuACCGGUGC- -5'
23765 5' -52.6 NC_005261.1 + 69519 0.66 0.973438
Target:  5'- gGCUGCcggaGCuGGCGCgGGCGcUGGCgCGCGc -3'
miRNA:   3'- -CGAUGa---UGuUCGCG-CUGU-ACCG-GUGC- -5'
23765 5' -52.6 NC_005261.1 + 45618 0.66 0.973438
Target:  5'- gGCgGCgcgGCGcGGCGCGGCG-GGcCCGCGc -3'
miRNA:   3'- -CGaUGa--UGU-UCGCGCUGUaCC-GGUGC- -5'
23765 5' -52.6 NC_005261.1 + 127714 0.66 0.9726
Target:  5'- aGCUGCgcgugGCcugccugguagcggGAGCuugGCGGCGggagcgGGCCGCGg -3'
miRNA:   3'- -CGAUGa----UG--------------UUCG---CGCUGUa-----CCGGUGC- -5'
23765 5' -52.6 NC_005261.1 + 42333 0.66 0.9726
Target:  5'- cGCggaACUGCAcguccuggaugcugGGCG-GGC-UGGCCGCGc -3'
miRNA:   3'- -CGa--UGAUGU--------------UCGCgCUGuACCGGUGC- -5'
23765 5' -52.6 NC_005261.1 + 109327 0.66 0.972316
Target:  5'- -----cGCGAGCGCGGCcgcggggucggcGGCCGCGu -3'
miRNA:   3'- cgaugaUGUUCGCGCUGua----------CCGGUGC- -5'
23765 5' -52.6 NC_005261.1 + 38593 0.66 0.970569
Target:  5'- cCUGCUGgcGGCccGCGGCuggcggguguUGGCCGCGg -3'
miRNA:   3'- cGAUGAUguUCG--CGCUGu---------ACCGGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.