miRNA display CGI


Results 1 - 20 of 343 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23768 5' -62.8 NC_005261.1 + 51449 0.66 0.650935
Target:  5'- cGUGAugaucaaccugGC-CGGCGGUCugcuggcgcugaucaCCGGCGcCGCGc -3'
miRNA:   3'- cCGCU-----------UGaGCCGCCAG---------------GGCCGC-GCGC- -5'
23768 5' -62.8 NC_005261.1 + 13367 0.66 0.650935
Target:  5'- gGGCGGcaccGCUCGuacagccggcuguacGCGGUCUCggagcgguagGGCGaCGCGa -3'
miRNA:   3'- -CCGCU----UGAGC---------------CGCCAGGG----------CCGC-GCGC- -5'
23768 5' -62.8 NC_005261.1 + 14975 0.66 0.64706
Target:  5'- gGGCGAcuGCgCGGCcgcgccGGccgcgCCCGGaGCGCGg -3'
miRNA:   3'- -CCGCU--UGaGCCG------CCa----GGGCCgCGCGC- -5'
23768 5' -62.8 NC_005261.1 + 28436 0.66 0.64706
Target:  5'- cGCGcACcgCGGcCGGccauggcgucUCCCGGCGgGCa -3'
miRNA:   3'- cCGCuUGa-GCC-GCC----------AGGGCCGCgCGc -5'
23768 5' -62.8 NC_005261.1 + 72461 0.66 0.64706
Target:  5'- cGGCGAGCgCGGCGaG-CgCGaGCGCGg- -3'
miRNA:   3'- -CCGCUUGaGCCGC-CaGgGC-CGCGCgc -5'
23768 5' -62.8 NC_005261.1 + 88091 0.66 0.64706
Target:  5'- uGCGAACggGGCGaGgcgcCCCcGCGCGCc -3'
miRNA:   3'- cCGCUUGagCCGC-Ca---GGGcCGCGCGc -5'
23768 5' -62.8 NC_005261.1 + 103195 0.66 0.64706
Target:  5'- cGCGGucACgcgCGGCGGcgccUCCUGcaggaaGCGCGCGc -3'
miRNA:   3'- cCGCU--UGa--GCCGCC----AGGGC------CGCGCGC- -5'
23768 5' -62.8 NC_005261.1 + 93926 0.66 0.64706
Target:  5'- cGCGGGCUUGcGCcGUCCgCGG-GCGCc -3'
miRNA:   3'- cCGCUUGAGC-CGcCAGG-GCCgCGCGc -5'
23768 5' -62.8 NC_005261.1 + 101510 0.66 0.64706
Target:  5'- uGGCcAGCcCGGCGcccucGUCgCGGuCGCGCGc -3'
miRNA:   3'- -CCGcUUGaGCCGC-----CAGgGCC-GCGCGC- -5'
23768 5' -62.8 NC_005261.1 + 16057 0.66 0.64706
Target:  5'- aGCGGGCcCGcGCcGagCCGGCGCGUGu -3'
miRNA:   3'- cCGCUUGaGC-CGcCagGGCCGCGCGC- -5'
23768 5' -62.8 NC_005261.1 + 51190 0.66 0.64706
Target:  5'- uGGCGAcGCUCGccaCGccCCCgGGCGCGCu -3'
miRNA:   3'- -CCGCU-UGAGCc--GCcaGGG-CCGCGCGc -5'
23768 5' -62.8 NC_005261.1 + 48430 0.66 0.64706
Target:  5'- aGGCGGuacaGCUC-GCGGUgCgUGGCGCGg- -3'
miRNA:   3'- -CCGCU----UGAGcCGCCA-GgGCCGCGCgc -5'
23768 5' -62.8 NC_005261.1 + 72179 0.66 0.64706
Target:  5'- cGGCGuccgaGACguuggCGGCGG-CC--GCGCGCGg -3'
miRNA:   3'- -CCGC-----UUGa----GCCGCCaGGgcCGCGCGC- -5'
23768 5' -62.8 NC_005261.1 + 94872 0.66 0.646092
Target:  5'- cGGCccGGGCg-GGCGG-CCCGcgugcagccacacGCGCGCGc -3'
miRNA:   3'- -CCG--CUUGagCCGCCaGGGC-------------CGCGCGC- -5'
23768 5' -62.8 NC_005261.1 + 71841 0.66 0.644154
Target:  5'- cGGCGAaguccgccacuggcGCUCGcgccgcuuGCGGUCCgccCGCGCGg -3'
miRNA:   3'- -CCGCU--------------UGAGC--------CGCCAGGgccGCGCGC- -5'
23768 5' -62.8 NC_005261.1 + 100920 0.66 0.641246
Target:  5'- cGCGAgcgucgccugcagccGCUgcaGGCccgcGUCCaCGGCGCGCGc -3'
miRNA:   3'- cCGCU---------------UGAg--CCGc---CAGG-GCCGCGCGC- -5'
23768 5' -62.8 NC_005261.1 + 73095 0.66 0.637369
Target:  5'- aGGCGuuGCgcaCGGCGGccagaaagCCCGcgucCGCGCGg -3'
miRNA:   3'- -CCGCu-UGa--GCCGCCa-------GGGCc---GCGCGC- -5'
23768 5' -62.8 NC_005261.1 + 98061 0.66 0.637369
Target:  5'- cGGCGGgaccGCgggCGGCGGgugugUCCUuggagaaucugGGgGCGCGg -3'
miRNA:   3'- -CCGCU----UGa--GCCGCC-----AGGG-----------CCgCGCGC- -5'
23768 5' -62.8 NC_005261.1 + 21814 0.66 0.637369
Target:  5'- gGGcCGGGCccgCGGCGGgcgCgCGuGCGgGCGg -3'
miRNA:   3'- -CC-GCUUGa--GCCGCCa--GgGC-CGCgCGC- -5'
23768 5' -62.8 NC_005261.1 + 59796 0.66 0.637369
Target:  5'- cGGCGGGCggcaGGcCGG-CgUGGCGcCGCGu -3'
miRNA:   3'- -CCGCUUGag--CC-GCCaGgGCCGC-GCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.