miRNA display CGI


Results 1 - 20 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23773 3' -57.5 NC_005261.1 + 136440 0.66 0.870471
Target:  5'- cCUCG-CgGGCGUCGCaGGGGCAcgcggcagCCCc -3'
miRNA:   3'- aGAGCuG-CUGCAGCG-CCCUGUa-------GGGc -5'
23773 3' -57.5 NC_005261.1 + 134742 0.66 0.883076
Target:  5'- aCUCGGCGACGgcacccgcgaccCGCGGcGGCAUggCGg -3'
miRNA:   3'- aGAGCUGCUGCa-----------GCGCC-CUGUAggGC- -5'
23773 3' -57.5 NC_005261.1 + 132118 0.66 0.870471
Target:  5'- gCUCGugGAgCGggacgCGCGGcuGACcgCCCu -3'
miRNA:   3'- aGAGCugCU-GCa----GCGCC--CUGuaGGGc -5'
23773 3' -57.5 NC_005261.1 + 131925 0.67 0.823877
Target:  5'- uUUUUGGCG-CG-CGCGGGACcgcggugCCCGc -3'
miRNA:   3'- -AGAGCUGCuGCaGCGCCCUGua-----GGGC- -5'
23773 3' -57.5 NC_005261.1 + 130256 0.7 0.655334
Target:  5'- --gCGGCu-CGUacUGCGGGGCGUCCCGc -3'
miRNA:   3'- agaGCUGcuGCA--GCGCCCUGUAGGGC- -5'
23773 3' -57.5 NC_005261.1 + 128504 0.66 0.870471
Target:  5'- gCUCGACG-CGgcgGCGGaGGCAgccUCCUGg -3'
miRNA:   3'- aGAGCUGCuGCag-CGCC-CUGU---AGGGC- -5'
23773 3' -57.5 NC_005261.1 + 127743 0.66 0.86392
Target:  5'- gCUUGGCGGCGggaGCGGGccGCGgcgggcgcgaagacgCCCGg -3'
miRNA:   3'- aGAGCUGCUGCag-CGCCC--UGUa--------------GGGC- -5'
23773 3' -57.5 NC_005261.1 + 127051 0.66 0.855694
Target:  5'- cCUCGAUGGCGUCGUacGGGuCcaugGUgCCGc -3'
miRNA:   3'- aGAGCUGCUGCAGCG--CCCuG----UAgGGC- -5'
23773 3' -57.5 NC_005261.1 + 125976 0.66 0.877557
Target:  5'- gCUCGGCGACGggggcCGCaacauggccucuGGaGuCGUCCCGu -3'
miRNA:   3'- aGAGCUGCUGCa----GCG------------CC-CuGUAGGGC- -5'
23773 3' -57.5 NC_005261.1 + 125329 0.66 0.848013
Target:  5'- cCUCGGCGuccgcaGCG-CGCaGGGCGUCCa- -3'
miRNA:   3'- aGAGCUGC------UGCaGCGcCCUGUAGGgc -5'
23773 3' -57.5 NC_005261.1 + 123458 0.7 0.635371
Target:  5'- --aUGACGcCGUCGCGGG-CcUCCCa -3'
miRNA:   3'- agaGCUGCuGCAGCGCCCuGuAGGGc -5'
23773 3' -57.5 NC_005261.1 + 123272 0.66 0.884435
Target:  5'- --gUGACGAgGU-GCGGGugGUCCg- -3'
miRNA:   3'- agaGCUGCUgCAgCGCCCugUAGGgc -5'
23773 3' -57.5 NC_005261.1 + 115771 0.68 0.752785
Target:  5'- gUCUCGGCGGCGUCGaCGuacGCGUagCCCa -3'
miRNA:   3'- -AGAGCUGCUGCAGC-GCcc-UGUA--GGGc -5'
23773 3' -57.5 NC_005261.1 + 113592 0.67 0.81549
Target:  5'- gCUgGGCGACcUCGCGcccGGGCA-CCCGc -3'
miRNA:   3'- aGAgCUGCUGcAGCGC---CCUGUaGGGC- -5'
23773 3' -57.5 NC_005261.1 + 110481 0.67 0.806945
Target:  5'- cUCUCGugGACcaCGCaGGACAagCUGg -3'
miRNA:   3'- -AGAGCugCUGcaGCGcCCUGUagGGC- -5'
23773 3' -57.5 NC_005261.1 + 110222 0.72 0.57565
Target:  5'- cCUCGGCGACGccuccagCGUGGGcggcGCGgcgCCCGg -3'
miRNA:   3'- aGAGCUGCUGCa------GCGCCC----UGUa--GGGC- -5'
23773 3' -57.5 NC_005261.1 + 109759 0.68 0.762114
Target:  5'- cUCcCGGCcgccGCGUCGCcgucucGGGCGUCCCGg -3'
miRNA:   3'- -AGaGCUGc---UGCAGCGc-----CCUGUAGGGC- -5'
23773 3' -57.5 NC_005261.1 + 107368 0.67 0.832098
Target:  5'- -gUCGugGGCG-C-CGGGGCG-CCCGc -3'
miRNA:   3'- agAGCugCUGCaGcGCCCUGUaGGGC- -5'
23773 3' -57.5 NC_005261.1 + 106644 0.75 0.40891
Target:  5'- gCUCGGCGACGUCGCGcucgccggcgcGGuCGUCCa- -3'
miRNA:   3'- aGAGCUGCUGCAGCGC-----------CCuGUAGGgc -5'
23773 3' -57.5 NC_005261.1 + 106450 0.68 0.780434
Target:  5'- -gUCGGCcACGUcCGCGcGGGCGUCCa- -3'
miRNA:   3'- agAGCUGcUGCA-GCGC-CCUGUAGGgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.