miRNA display CGI


Results 1 - 20 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23773 5' -58.7 NC_005261.1 + 59367 0.66 0.780349
Target:  5'- ----gGGUguCGCCCGCcagcgcccgcgccacGGCGCCGAg -3'
miRNA:   3'- aaguaCCAguGCGGGCGu--------------CUGCGGCU- -5'
23773 5' -58.7 NC_005261.1 + 84971 0.66 0.779426
Target:  5'- gUCG-GG-CGCGUCCGCGauGCGCCGGc -3'
miRNA:   3'- aAGUaCCaGUGCGGGCGUc-UGCGGCU- -5'
23773 5' -58.7 NC_005261.1 + 93669 0.66 0.779426
Target:  5'- ----cGGUCcgcgggcggcgGCGCCgGCgGGGCGCCGGc -3'
miRNA:   3'- aaguaCCAG-----------UGCGGgCG-UCUGCGGCU- -5'
23773 5' -58.7 NC_005261.1 + 116867 0.66 0.779426
Target:  5'- uUUCAgUGGgccCcCGCCCGCgaGGACGCgCGGg -3'
miRNA:   3'- -AAGU-ACCa--GuGCGGGCG--UCUGCG-GCU- -5'
23773 5' -58.7 NC_005261.1 + 16236 0.66 0.779426
Target:  5'- cUCGgggcGGUCgACGUCCGCgccgGGGCcGCCGGg -3'
miRNA:   3'- aAGUa---CCAG-UGCGGGCG----UCUG-CGGCU- -5'
23773 5' -58.7 NC_005261.1 + 10967 0.66 0.777575
Target:  5'- -gCGUGGgccgccccgcccCGCGCCCGaCuGGCGCUGGu -3'
miRNA:   3'- aaGUACCa-----------GUGCGGGC-GuCUGCGGCU- -5'
23773 5' -58.7 NC_005261.1 + 81435 0.66 0.770124
Target:  5'- gUCGUcGGcCGC-CCCGCggcGGGCGCCGc -3'
miRNA:   3'- aAGUA-CCaGUGcGGGCG---UCUGCGGCu -5'
23773 5' -58.7 NC_005261.1 + 49918 0.66 0.770124
Target:  5'- gUUGUGGcCcgccucgagGCGCCCGCGGA-GCCGc -3'
miRNA:   3'- aAGUACCaG---------UGCGGGCGUCUgCGGCu -5'
23773 5' -58.7 NC_005261.1 + 3297 0.66 0.770124
Target:  5'- ----aGGUC-CGCCCGCGG-UGCCc- -3'
miRNA:   3'- aaguaCCAGuGCGGGCGUCuGCGGcu -5'
23773 5' -58.7 NC_005261.1 + 68652 0.66 0.770124
Target:  5'- gUCAUcGUCAccgcCGCCCGC-GcCGCCGGc -3'
miRNA:   3'- aAGUAcCAGU----GCGGGCGuCuGCGGCU- -5'
23773 5' -58.7 NC_005261.1 + 37743 0.66 0.760701
Target:  5'- -----cGUCGCccCCCGCGGGCGCCGc -3'
miRNA:   3'- aaguacCAGUGc-GGGCGUCUGCGGCu -5'
23773 5' -58.7 NC_005261.1 + 125273 0.66 0.760701
Target:  5'- gUCcgGGggccgCugGaagucaggCCGCGGGCGCCGGa -3'
miRNA:   3'- aAGuaCCa----GugCg-------GGCGUCUGCGGCU- -5'
23773 5' -58.7 NC_005261.1 + 58885 0.66 0.760701
Target:  5'- gUCcgGG-CGgGCCuCGCAGGCGCgCGc -3'
miRNA:   3'- aAGuaCCaGUgCGG-GCGUCUGCG-GCu -5'
23773 5' -58.7 NC_005261.1 + 59140 0.66 0.760701
Target:  5'- cUCAggccGG-CGCGCCC-CGGGCGCgCGGc -3'
miRNA:   3'- aAGUa---CCaGUGCGGGcGUCUGCG-GCU- -5'
23773 5' -58.7 NC_005261.1 + 112802 0.66 0.751165
Target:  5'- -aCAUGGaCACGgCCGgGGACGCg-- -3'
miRNA:   3'- aaGUACCaGUGCgGGCgUCUGCGgcu -5'
23773 5' -58.7 NC_005261.1 + 62281 0.66 0.751165
Target:  5'- gUUGUGGUacaucacgucgGCGCCgCGCGGGCGCgCGGc -3'
miRNA:   3'- aAGUACCAg----------UGCGG-GCGUCUGCG-GCU- -5'
23773 5' -58.7 NC_005261.1 + 2399 0.66 0.751165
Target:  5'- ----cGGcgagCGCGCCCGCGGGCcCCGc -3'
miRNA:   3'- aaguaCCa---GUGCGGGCGUCUGcGGCu -5'
23773 5' -58.7 NC_005261.1 + 131449 0.66 0.741524
Target:  5'- ---uUGcGcCGCGCCuCGCGGGCGCCu- -3'
miRNA:   3'- aaguAC-CaGUGCGG-GCGUCUGCGGcu -5'
23773 5' -58.7 NC_005261.1 + 104831 0.66 0.741524
Target:  5'- gUCGcggGGcCGCGCCaCGCGGACcGCgCGGg -3'
miRNA:   3'- aAGUa--CCaGUGCGG-GCGUCUG-CG-GCU- -5'
23773 5' -58.7 NC_005261.1 + 116069 0.66 0.741524
Target:  5'- -gCGUGG-CGCGCCggucccCGUGGAUGCCGc -3'
miRNA:   3'- aaGUACCaGUGCGG------GCGUCUGCGGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.