miRNA display CGI


Results 21 - 40 of 193 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23776 3' -63.4 NC_005261.1 + 9848 0.72 0.27449
Target:  5'- cCCGGGGcaagcccGCCCCagCCGgcCUG-CCCCGGCg -3'
miRNA:   3'- -GGCCUC-------CGGGGa-GGC--GAUaGGGGCCG- -5'
23776 3' -63.4 NC_005261.1 + 9905 0.72 0.27449
Target:  5'- cCCGGGGcaagcccGCCCCagCCGgcCUG-CCCCGGCg -3'
miRNA:   3'- -GGCCUC-------CGGGGa-GGC--GAUaGGGGCCG- -5'
23776 3' -63.4 NC_005261.1 + 9962 0.67 0.543989
Target:  5'- cCCGGGGcaagcccGCCCCcCCGgacgcgCCUCGGCg -3'
miRNA:   3'- -GGCCUC-------CGGGGaGGCgaua--GGGGCCG- -5'
23776 3' -63.4 NC_005261.1 + 10090 0.67 0.544932
Target:  5'- cCCGac--CCCCgCCGCg--CCCCGGCa -3'
miRNA:   3'- -GGCcuccGGGGaGGCGauaGGGGCCG- -5'
23776 3' -63.4 NC_005261.1 + 10519 0.73 0.257178
Target:  5'- gCUGcGGGCCCCgcggcgcgCuCGCUGUcgcCCCCGGCg -3'
miRNA:   3'- -GGCcUCCGGGGa-------G-GCGAUA---GGGGCCG- -5'
23776 3' -63.4 NC_005261.1 + 10710 0.67 0.496715
Target:  5'- gCGGgccgccuccGGGCCCCccucuuccUCCGCcgccuccucccgGUCCUCGGCc -3'
miRNA:   3'- gGCC---------UCCGGGG--------AGGCGa-----------UAGGGGCCG- -5'
23776 3' -63.4 NC_005261.1 + 10971 0.66 0.612905
Target:  5'- -gGGccGCCCCgccCCGCgcccgacuggcgcugGUCCuCCGGCu -3'
miRNA:   3'- ggCCucCGGGGa--GGCGa--------------UAGG-GGCCG- -5'
23776 3' -63.4 NC_005261.1 + 11835 0.66 0.611939
Target:  5'- gCGGGGGCCCCgcgggCgCGC-GUUCgCGaGCg -3'
miRNA:   3'- gGCCUCCGGGGa----G-GCGaUAGGgGC-CG- -5'
23776 3' -63.4 NC_005261.1 + 11935 0.7 0.379654
Target:  5'- gCGGcGGCCCgCgCCGCggcggcUCgCCCGGCg -3'
miRNA:   3'- gGCCuCCGGG-GaGGCGau----AG-GGGCCG- -5'
23776 3' -63.4 NC_005261.1 + 12432 0.66 0.611939
Target:  5'- gCGGAGGgCUUgcggcgucggCCGCgucggcgCCCCGGUa -3'
miRNA:   3'- gGCCUCCgGGGa---------GGCGaua----GGGGCCG- -5'
23776 3' -63.4 NC_005261.1 + 13310 0.66 0.611939
Target:  5'- aCGGGGGCCUCguaCGCagcgCCCUcGCa -3'
miRNA:   3'- gGCCUCCGGGGag-GCGaua-GGGGcCG- -5'
23776 3' -63.4 NC_005261.1 + 15074 0.67 0.539284
Target:  5'- gUCGGGGGUcaggcucgcccucguCCCggucUCCGaCgucUCCCCGGCc -3'
miRNA:   3'- -GGCCUCCG---------------GGG----AGGC-Gau-AGGGGCCG- -5'
23776 3' -63.4 NC_005261.1 + 15233 0.77 0.122589
Target:  5'- gCCGGcguugAGGCCCCgcucgcagugggCCGCgaucgCCCCGGCg -3'
miRNA:   3'- -GGCC-----UCCGGGGa-----------GGCGaua--GGGGCCG- -5'
23776 3' -63.4 NC_005261.1 + 15976 0.73 0.224205
Target:  5'- -gGGAGGgCCCgggCCGCUcaCCCgGGCa -3'
miRNA:   3'- ggCCUCCgGGGa--GGCGAuaGGGgCCG- -5'
23776 3' -63.4 NC_005261.1 + 16266 0.66 0.602278
Target:  5'- gCCGG-GGCCgggCUUCgGCUcgCCCgGGg -3'
miRNA:   3'- -GGCCuCCGG---GGAGgCGAuaGGGgCCg -5'
23776 3' -63.4 NC_005261.1 + 17327 0.67 0.535529
Target:  5'- cCCGGcccGGCCCagcucCCGCcccgCCCgGGCa -3'
miRNA:   3'- -GGCCu--CCGGGga---GGCGaua-GGGgCCG- -5'
23776 3' -63.4 NC_005261.1 + 18381 0.71 0.313924
Target:  5'- gUCGGAGGUCCCaaagCCGCUGcggacgcgggCCUCGGa -3'
miRNA:   3'- -GGCCUCCGGGGa---GGCGAUa---------GGGGCCg -5'
23776 3' -63.4 NC_005261.1 + 19998 0.7 0.371911
Target:  5'- cCCGGccgcGGCCCCUgacCCGCacccGUCCgCGGUc -3'
miRNA:   3'- -GGCCu---CCGGGGA---GGCGa---UAGGgGCCG- -5'
23776 3' -63.4 NC_005261.1 + 20207 0.68 0.480468
Target:  5'- gCCGccaaAGGCCCCgcgcCCGCUG--CCUGGCc -3'
miRNA:   3'- -GGCc---UCCGGGGa---GGCGAUagGGGCCG- -5'
23776 3' -63.4 NC_005261.1 + 20314 0.69 0.406773
Target:  5'- aCGGcgacuGGGCCCCgagCCGCgcacgagcgacgCCCgCGGCu -3'
miRNA:   3'- gGCC-----UCCGGGGa--GGCGaua---------GGG-GCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.