miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23777 3' -55 NC_005261.1 + 22747 0.65 0.95192
Target:  5'- -gCGCGgggcgGCggCGgcccacgCGUCUGGgGGCGGg -3'
miRNA:   3'- agGCGUa----UGa-GCa------GCAGACUgCCGCC- -5'
23777 3' -55 NC_005261.1 + 14668 0.65 0.95192
Target:  5'- gCCGCGcgcggcguuUAUUCuUCG-CUGAUGGUGGc -3'
miRNA:   3'- aGGCGU---------AUGAGcAGCaGACUGCCGCC- -5'
23777 3' -55 NC_005261.1 + 118167 0.65 0.95192
Target:  5'- gUCGCGgcgggGCUUGcCGUCUGgGCcGCGGg -3'
miRNA:   3'- aGGCGUa----UGAGCaGCAGAC-UGcCGCC- -5'
23777 3' -55 NC_005261.1 + 37850 0.65 0.95192
Target:  5'- gCCGCcgACuUCGgCGUCcccgacgccUGGCGGCGc -3'
miRNA:   3'- aGGCGuaUG-AGCaGCAG---------ACUGCCGCc -5'
23777 3' -55 NC_005261.1 + 35978 0.65 0.95192
Target:  5'- gCCGCuguaGCggCGgCGgcucCUGGCGGCGGu -3'
miRNA:   3'- aGGCGua--UGa-GCaGCa---GACUGCCGCC- -5'
23777 3' -55 NC_005261.1 + 112736 0.66 0.947765
Target:  5'- gUCCGCAgcaUCGUCa--UGACGG-GGa -3'
miRNA:   3'- -AGGCGUaugAGCAGcagACUGCCgCC- -5'
23777 3' -55 NC_005261.1 + 123707 0.66 0.94338
Target:  5'- gCCGCGUACUCGgccaucagcagCGUCgucGCGGUc- -3'
miRNA:   3'- aGGCGUAUGAGCa----------GCAGac-UGCCGcc -5'
23777 3' -55 NC_005261.1 + 98245 0.66 0.938762
Target:  5'- uUCCGCggcccgGUGCggCG-CGUCaGGCGGCGc -3'
miRNA:   3'- -AGGCG------UAUGa-GCaGCAGaCUGCCGCc -5'
23777 3' -55 NC_005261.1 + 63052 0.66 0.938287
Target:  5'- gUCgCGCAgcaGCgccgCGUCG-CUGgcgcacaGCGGCGGg -3'
miRNA:   3'- -AG-GCGUa--UGa---GCAGCaGAC-------UGCCGCC- -5'
23777 3' -55 NC_005261.1 + 57784 0.66 0.933909
Target:  5'- gUCCGCGg---CGUCG-C--GCGGCGGg -3'
miRNA:   3'- -AGGCGUaugaGCAGCaGacUGCCGCC- -5'
23777 3' -55 NC_005261.1 + 37354 0.66 0.933909
Target:  5'- aUCCGCgggcgGUGCUCGcCGcCcgaGGCGGCGc -3'
miRNA:   3'- -AGGCG-----UAUGAGCaGCaGa--CUGCCGCc -5'
23777 3' -55 NC_005261.1 + 10205 0.66 0.933909
Target:  5'- aCCGCGUGCUCccagggcccgCGcCUGcccaGGCGGg -3'
miRNA:   3'- aGGCGUAUGAGca--------GCaGACug--CCGCC- -5'
23777 3' -55 NC_005261.1 + 32595 0.66 0.931901
Target:  5'- cUCCGCGUccucCUCGUCGUCcgcguccucggacGACGaGcCGGg -3'
miRNA:   3'- -AGGCGUAu---GAGCAGCAGa------------CUGC-C-GCC- -5'
23777 3' -55 NC_005261.1 + 2381 0.66 0.928819
Target:  5'- gCCGCAgcggCG-CG-CUGGCGGCGa -3'
miRNA:   3'- aGGCGUaugaGCaGCaGACUGCCGCc -5'
23777 3' -55 NC_005261.1 + 94627 0.66 0.928819
Target:  5'- gCCGCcgGCgcCGUCGUC-GGCGcGCGc -3'
miRNA:   3'- aGGCGuaUGa-GCAGCAGaCUGC-CGCc -5'
23777 3' -55 NC_005261.1 + 104075 0.66 0.928819
Target:  5'- -gCGCGUccaGCUCGgCGgacagGGCGGCGGc -3'
miRNA:   3'- agGCGUA---UGAGCaGCaga--CUGCCGCC- -5'
23777 3' -55 NC_005261.1 + 38885 0.66 0.928819
Target:  5'- aUCGCGUGCacgaagaCGUCGUCcuucuccGGCGcGCGGg -3'
miRNA:   3'- aGGCGUAUGa------GCAGCAGa------CUGC-CGCC- -5'
23777 3' -55 NC_005261.1 + 68208 0.67 0.923493
Target:  5'- gCCGCcgGCgCGgccgacaacggCGaccCUGACGGCGGg -3'
miRNA:   3'- aGGCGuaUGaGCa----------GCa--GACUGCCGCC- -5'
23777 3' -55 NC_005261.1 + 13127 0.67 0.923493
Target:  5'- gCCGCGggGCgcgUGUgGUCggUGACGGCGc -3'
miRNA:   3'- aGGCGUa-UGa--GCAgCAG--ACUGCCGCc -5'
23777 3' -55 NC_005261.1 + 20541 0.67 0.91793
Target:  5'- aCCGCGcucUGCUgGaCGU--GGCGGCGGg -3'
miRNA:   3'- aGGCGU---AUGAgCaGCAgaCUGCCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.