miRNA display CGI


Results 1 - 20 of 226 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23777 5' -62.2 NC_005261.1 + 35737 0.66 0.651688
Target:  5'- aGGCCACCUgggccgaagCCAGCCGCgaaggCGGcucgGGcCGAg -3'
miRNA:   3'- -CCGGUGGG---------GGUCGGCG-----GCCaa--CU-GCU- -5'
23777 5' -62.2 NC_005261.1 + 93949 0.66 0.651688
Target:  5'- cGCCGCCUCCgGGCgGUCGGccGuCGAc -3'
miRNA:   3'- cCGGUGGGGG-UCGgCGGCCaaCuGCU- -5'
23777 5' -62.2 NC_005261.1 + 85132 0.66 0.651688
Target:  5'- cGGCCACguugCCCGG-CGUgaGGUUGACGu -3'
miRNA:   3'- -CCGGUGg---GGGUCgGCGg-CCAACUGCu -5'
23777 5' -62.2 NC_005261.1 + 126682 0.66 0.651688
Target:  5'- aGGCCcuCCUCCgaGGCCGgCGGU--GCGGg -3'
miRNA:   3'- -CCGGu-GGGGG--UCGGCgGCCAacUGCU- -5'
23777 5' -62.2 NC_005261.1 + 92179 0.66 0.651688
Target:  5'- aGCCGCCgggCCCGacGCCGCCGc-UGGCGc -3'
miRNA:   3'- cCGGUGG---GGGU--CGGCGGCcaACUGCu -5'
23777 5' -62.2 NC_005261.1 + 72961 0.66 0.651688
Target:  5'- cGGCuCGCgCCC-GCCGCCGcGggGguccGCGAg -3'
miRNA:   3'- -CCG-GUGgGGGuCGGCGGC-CaaC----UGCU- -5'
23777 5' -62.2 NC_005261.1 + 39760 0.66 0.651688
Target:  5'- cGGCCuccugcaggaugGCCUCgAggacGUCGCCGGggGGCGGc -3'
miRNA:   3'- -CCGG------------UGGGGgU----CGGCGGCCaaCUGCU- -5'
23777 5' -62.2 NC_005261.1 + 127327 0.66 0.651688
Target:  5'- uGCCGCCCgCGGggGCCGGagcGGCGGg -3'
miRNA:   3'- cCGGUGGGgGUCggCGGCCaa-CUGCU- -5'
23777 5' -62.2 NC_005261.1 + 71909 0.66 0.651688
Target:  5'- cGCCGCCggCCAGCaCGUC-GUUGACGu -3'
miRNA:   3'- cCGGUGGg-GGUCG-GCGGcCAACUGCu -5'
23777 5' -62.2 NC_005261.1 + 16060 0.66 0.651688
Target:  5'- gGGcCCGCgCCgAGCCGgCGcGUguaGACGAa -3'
miRNA:   3'- -CC-GGUGgGGgUCGGCgGC-CAa--CUGCU- -5'
23777 5' -62.2 NC_005261.1 + 68977 0.66 0.648746
Target:  5'- cGCCACCgcggCCCuuuucgGGCCGCgCGGgcgccgcggcuucgUUGGCGAg -3'
miRNA:   3'- cCGGUGG----GGG------UCGGCG-GCC--------------AACUGCU- -5'
23777 5' -62.2 NC_005261.1 + 87573 0.66 0.645802
Target:  5'- cGUCAgCCCCGcGCCGCCcaggccgguggucuuGGUgccGGCGAc -3'
miRNA:   3'- cCGGUgGGGGU-CGGCGG---------------CCAa--CUGCU- -5'
23777 5' -62.2 NC_005261.1 + 118347 0.66 0.641876
Target:  5'- gGGCUGCuCCUCGGCCucucgGCCGGgcgcuggGGCGc -3'
miRNA:   3'- -CCGGUG-GGGGUCGG-----CGGCCaa-----CUGCu -5'
23777 5' -62.2 NC_005261.1 + 1389 0.66 0.641876
Target:  5'- aGGCCACgCCgggcgccgCGGCCGCgGcGgcGGCGGg -3'
miRNA:   3'- -CCGGUGgGG--------GUCGGCGgC-CaaCUGCU- -5'
23777 5' -62.2 NC_005261.1 + 88341 0.66 0.641876
Target:  5'- uGGCgGCgCCCC-GCCGCCGc--GGCGu -3'
miRNA:   3'- -CCGgUG-GGGGuCGGCGGCcaaCUGCu -5'
23777 5' -62.2 NC_005261.1 + 109831 0.66 0.641876
Target:  5'- cGGCCGCCgaaucuggCguGCCGuuGGU-GGCGGc -3'
miRNA:   3'- -CCGGUGGg-------GguCGGCggCCAaCUGCU- -5'
23777 5' -62.2 NC_005261.1 + 13938 0.66 0.641876
Target:  5'- cGGUCGCguugcggCCCAGCCGCgcggaaacgcgCGGUcaggGACGAc -3'
miRNA:   3'- -CCGGUGg------GGGUCGGCG-----------GCCAa---CUGCU- -5'
23777 5' -62.2 NC_005261.1 + 34730 0.66 0.641876
Target:  5'- cGG-CGCCCCCuGGCgGCCGcGggGugGu -3'
miRNA:   3'- -CCgGUGGGGG-UCGgCGGC-CaaCugCu -5'
23777 5' -62.2 NC_005261.1 + 46392 0.66 0.641876
Target:  5'- cGCCGgCCCC-GUCGCCGacggUGGCGu -3'
miRNA:   3'- cCGGUgGGGGuCGGCGGCca--ACUGCu -5'
23777 5' -62.2 NC_005261.1 + 44307 0.66 0.641876
Target:  5'- gGGCCgcuGCCCgCGGgCGCCGca-GACGGg -3'
miRNA:   3'- -CCGG---UGGGgGUCgGCGGCcaaCUGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.