miRNA display CGI


Results 1 - 20 of 217 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23794 3' -58.8 NC_005261.1 + 94157 0.65 0.775008
Target:  5'- aGCGCcCGGGucgcgAAGGCGCCcaccagcguggcgcGGUGCGCg -3'
miRNA:   3'- cUGUGcGUCC-----UUCCGCGG--------------CUACGCGa -5'
23794 3' -58.8 NC_005261.1 + 71076 0.66 0.768464
Target:  5'- cGGCGgGCGGGGcguccGGGC-CCGAgaagGCGUa -3'
miRNA:   3'- -CUGUgCGUCCU-----UCCGcGGCUa---CGCGa -5'
23794 3' -58.8 NC_005261.1 + 113306 0.66 0.768464
Target:  5'- uGC-CGCGGGccuGGGC-CCGGcUGCGCg -3'
miRNA:   3'- cUGuGCGUCCu--UCCGcGGCU-ACGCGa -5'
23794 3' -58.8 NC_005261.1 + 25790 0.66 0.768464
Target:  5'- cGGCGaGCAGGAuggagcucAGGCGCCaucuGGUGgCGCc -3'
miRNA:   3'- -CUGUgCGUCCU--------UCCGCGG----CUAC-GCGa -5'
23794 3' -58.8 NC_005261.1 + 100640 0.66 0.768464
Target:  5'- aGGCGCGCGGccc-GCGCCGcaacgGCGCg -3'
miRNA:   3'- -CUGUGCGUCcuucCGCGGCua---CGCGa -5'
23794 3' -58.8 NC_005261.1 + 54832 0.66 0.768464
Target:  5'- cAUACGCGGGcAGGGCuaGCUGccgGCGCc -3'
miRNA:   3'- cUGUGCGUCC-UUCCG--CGGCua-CGCGa -5'
23794 3' -58.8 NC_005261.1 + 98292 0.66 0.764698
Target:  5'- cGGCGCGUccgcggccucGGGGgcGGGCGCCGccgccagcggcgGCGCg -3'
miRNA:   3'- -CUGUGCG----------UCCU--UCCGCGGCua----------CGCGa -5'
23794 3' -58.8 NC_005261.1 + 28240 0.66 0.759013
Target:  5'- cGGCGCGCgcgauAGcGggGGCuGCuCGGggggGCGCUg -3'
miRNA:   3'- -CUGUGCG-----UC-CuuCCG-CG-GCUa---CGCGA- -5'
23794 3' -58.8 NC_005261.1 + 73711 0.66 0.759013
Target:  5'- --gGCGCAGGAccGCgGUCGGcgUGCGCg -3'
miRNA:   3'- cugUGCGUCCUucCG-CGGCU--ACGCGa -5'
23794 3' -58.8 NC_005261.1 + 120942 0.66 0.759013
Target:  5'- --gGCGCGGGAAGGUGgaggcucgcgccCCGcgggGCGCg -3'
miRNA:   3'- cugUGCGUCCUUCCGC------------GGCua--CGCGa -5'
23794 3' -58.8 NC_005261.1 + 27341 0.66 0.759013
Target:  5'- --aACGgGGGAAagggggagcGGCGCCGGaccgGCGCg -3'
miRNA:   3'- cugUGCgUCCUU---------CCGCGGCUa---CGCGa -5'
23794 3' -58.8 NC_005261.1 + 71965 0.66 0.759013
Target:  5'- --gGCGCGGGGcgcggAGcGCGCggcaGGUGCGCa -3'
miRNA:   3'- cugUGCGUCCU-----UC-CGCGg---CUACGCGa -5'
23794 3' -58.8 NC_005261.1 + 130854 0.66 0.759013
Target:  5'- cGCGCGCGcccGGccGGGCGCCGcgGC-CUg -3'
miRNA:   3'- cUGUGCGU---CCu-UCCGCGGCuaCGcGA- -5'
23794 3' -58.8 NC_005261.1 + 9624 0.66 0.759013
Target:  5'- gGGCAgGCGGGGguGGGgGCUGgGUGgGCg -3'
miRNA:   3'- -CUGUgCGUCCU--UCCgCGGC-UACgCGa -5'
23794 3' -58.8 NC_005261.1 + 73056 0.66 0.75711
Target:  5'- -cCGCGCcuAGGAAGGCGCacguguucgccaGGaGCGCg -3'
miRNA:   3'- cuGUGCG--UCCUUCCGCGg-----------CUaCGCGa -5'
23794 3' -58.8 NC_005261.1 + 56173 0.66 0.749451
Target:  5'- gGGCcCGCGGGGAGGa--CGAcGCGCg -3'
miRNA:   3'- -CUGuGCGUCCUUCCgcgGCUaCGCGa -5'
23794 3' -58.8 NC_005261.1 + 123654 0.66 0.749451
Target:  5'- -cCACGCccAGGAAGGcCGCUGucaucucGCGCa -3'
miRNA:   3'- cuGUGCG--UCCUUCC-GCGGCua-----CGCGa -5'
23794 3' -58.8 NC_005261.1 + 69514 0.66 0.749451
Target:  5'- cGGCGgGCugccGGAgcuggcgcGGGCGCUGgcGCGCg -3'
miRNA:   3'- -CUGUgCGu---CCU--------UCCGCGGCuaCGCGa -5'
23794 3' -58.8 NC_005261.1 + 33054 0.66 0.749451
Target:  5'- --gGC-CAGGAcucGGCGCCGGggacgcgGCGCUg -3'
miRNA:   3'- cugUGcGUCCUu--CCGCGGCUa------CGCGA- -5'
23794 3' -58.8 NC_005261.1 + 60826 0.66 0.749451
Target:  5'- -uCAUGCAGGAGaucaucggcGGCGgCGAggucGCGCg -3'
miRNA:   3'- cuGUGCGUCCUU---------CCGCgGCUa---CGCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.