miRNA display CGI


Results 1 - 20 of 222 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23794 5' -53.8 NC_005261.1 + 138223 0.71 0.703972
Target:  5'- -cGGCGGC-UCgGCCGCCGCGcGGUGa -3'
miRNA:   3'- aaUCGUCGcAG-CGGCGGUGUuUCAUg -5'
23794 5' -53.8 NC_005261.1 + 138077 0.68 0.829713
Target:  5'- -cGGCAGCGguccuggUC-CCGCgACGGGGUGCc -3'
miRNA:   3'- aaUCGUCGC-------AGcGGCGgUGUUUCAUG- -5'
23794 5' -53.8 NC_005261.1 + 137886 0.79 0.287767
Target:  5'- -cAGCGGUGcCGCCGCCGCcccuGGUGCu -3'
miRNA:   3'- aaUCGUCGCaGCGGCGGUGuu--UCAUG- -5'
23794 5' -53.8 NC_005261.1 + 135428 0.66 0.919164
Target:  5'- -gAGguGCGcUCGCaCGCCGCccAGgcgGCg -3'
miRNA:   3'- aaUCguCGC-AGCG-GCGGUGuuUCa--UG- -5'
23794 5' -53.8 NC_005261.1 + 135233 0.67 0.879154
Target:  5'- -gAGC-GCGUCGCCGCCGuCuu--UGCg -3'
miRNA:   3'- aaUCGuCGCAGCGGCGGU-GuuucAUG- -5'
23794 5' -53.8 NC_005261.1 + 135080 0.67 0.906841
Target:  5'- -cGGCGGCGggcUCGCgGCCcggcgGCGGAGcGCg -3'
miRNA:   3'- aaUCGUCGC---AGCGgCGG-----UGUUUCaUG- -5'
23794 5' -53.8 NC_005261.1 + 134566 0.67 0.886447
Target:  5'- -gGGCGGCGcCGCgGCUGCGcAGgGCg -3'
miRNA:   3'- aaUCGUCGCaGCGgCGGUGUuUCaUG- -5'
23794 5' -53.8 NC_005261.1 + 134484 0.67 0.892802
Target:  5'- -gGGCGGCGUCGUCGCgcugcugCACuacGAGcACa -3'
miRNA:   3'- aaUCGUCGCAGCGGCG-------GUGu--UUCaUG- -5'
23794 5' -53.8 NC_005261.1 + 133477 0.69 0.812742
Target:  5'- -cAGCAGUG-CuUCGCCACcAAGUGCg -3'
miRNA:   3'- aaUCGUCGCaGcGGCGGUGuUUCAUG- -5'
23794 5' -53.8 NC_005261.1 + 133164 0.7 0.774988
Target:  5'- --cGuCGGCGUCGCCGCCgACAAccgcgGCg -3'
miRNA:   3'- aauC-GUCGCAGCGGCGG-UGUUuca--UG- -5'
23794 5' -53.8 NC_005261.1 + 132649 0.68 0.855861
Target:  5'- --cGCGGCGgcccuaGCgGCCGCGuguGGGUGCg -3'
miRNA:   3'- aauCGUCGCag----CGgCGGUGU---UUCAUG- -5'
23794 5' -53.8 NC_005261.1 + 132478 0.66 0.913132
Target:  5'- -cGGCAGCGccUCGCCGuCCugGGAc--- -3'
miRNA:   3'- aaUCGUCGC--AGCGGC-GGugUUUcaug -5'
23794 5' -53.8 NC_005261.1 + 132158 0.66 0.93045
Target:  5'- -gAGC-GCGcCGCCGCUGCAGgcAGcGCg -3'
miRNA:   3'- aaUCGuCGCaGCGGCGGUGUU--UCaUG- -5'
23794 5' -53.8 NC_005261.1 + 132076 0.7 0.774988
Target:  5'- --cGCGGCcgccGUCGCCgcuGCCGCGGAGgGCg -3'
miRNA:   3'- aauCGUCG----CAGCGG---CGGUGUUUCaUG- -5'
23794 5' -53.8 NC_005261.1 + 131879 0.68 0.839219
Target:  5'- cUGGCGGC--CGCCGCCGCAcgcgACg -3'
miRNA:   3'- aAUCGUCGcaGCGGCGGUGUuucaUG- -5'
23794 5' -53.8 NC_005261.1 + 131836 0.67 0.886447
Target:  5'- --cGCGGCGccCGCCuGCUGCGGGGUGu -3'
miRNA:   3'- aauCGUCGCa-GCGG-CGGUGUUUCAUg -5'
23794 5' -53.8 NC_005261.1 + 131196 0.66 0.919164
Target:  5'- --cGCGGCGcggUCGCCGCCgGCGcgcccgcGUACg -3'
miRNA:   3'- aauCGUCGC---AGCGGCGG-UGUuu-----CAUG- -5'
23794 5' -53.8 NC_005261.1 + 131156 0.66 0.935702
Target:  5'- --uGCGGCGcUCGCCGCCuucugcugccGCAGcGGcUACg -3'
miRNA:   3'- aauCGUCGC-AGCGGCGG----------UGUU-UC-AUG- -5'
23794 5' -53.8 NC_005261.1 + 129533 0.72 0.619022
Target:  5'- -aGGCGcGCGggCuaCGCCGCAAGGUGCa -3'
miRNA:   3'- aaUCGU-CGCa-GcgGCGGUGUUUCAUG- -5'
23794 5' -53.8 NC_005261.1 + 128841 0.68 0.839219
Target:  5'- --cGCGGC-UgGCCGCCAC--GGUGCc -3'
miRNA:   3'- aauCGUCGcAgCGGCGGUGuuUCAUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.