Results 1 - 20 of 320 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23798 | 3' | -62.5 | NC_005261.1 | + | 14347 | 0.66 | 0.63572 |
Target: 5'- aGCaGCAG-CGGCaGCagccgcGGCCGGgGCGGc -3' miRNA: 3'- -CG-CGUCaGCCG-CGa-----CCGGCUgCGCCu -5' |
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23798 | 3' | -62.5 | NC_005261.1 | + | 61030 | 0.66 | 0.63572 |
Target: 5'- gGgGCGGcaccgCGGCaGCUGGCUGGUGCuGGGc -3' miRNA: 3'- -CgCGUCa----GCCG-CGACCGGCUGCG-CCU- -5' |
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23798 | 3' | -62.5 | NC_005261.1 | + | 81504 | 0.66 | 0.63572 |
Target: 5'- aGCGCGG-CGcGCGCgccgccGCCGGCGCcaggcgcugcaGGAc -3' miRNA: 3'- -CGCGUCaGC-CGCGac----CGGCUGCG-----------CCU- -5' |
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23798 | 3' | -62.5 | NC_005261.1 | + | 88773 | 0.66 | 0.63572 |
Target: 5'- uGCGCuccUCGGCcCUGGCCGccgGCGCcgcgcagcaGGAc -3' miRNA: 3'- -CGCGuc-AGCCGcGACCGGC---UGCG---------CCU- -5' |
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23798 | 3' | -62.5 | NC_005261.1 | + | 68560 | 0.66 | 0.63572 |
Target: 5'- uGCGCGGgcucuUUGaGCGCgucgccGCCGAgGCGGGc -3' miRNA: 3'- -CGCGUC-----AGC-CGCGac----CGGCUgCGCCU- -5' |
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23798 | 3' | -62.5 | NC_005261.1 | + | 105122 | 0.66 | 0.63572 |
Target: 5'- cGCGCGGgcgCGG-GCc-GCCGGCGCGc- -3' miRNA: 3'- -CGCGUCa--GCCgCGacCGGCUGCGCcu -5' |
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23798 | 3' | -62.5 | NC_005261.1 | + | 19071 | 0.66 | 0.63572 |
Target: 5'- uGCGCGGcucUCGGCGC-GuGCUuGCGUGGc -3' miRNA: 3'- -CGCGUC---AGCCGCGaC-CGGcUGCGCCu -5' |
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23798 | 3' | -62.5 | NC_005261.1 | + | 77674 | 0.66 | 0.63572 |
Target: 5'- gGCGCAG--GGCGCggacgGGCCGggcuACGaCGGc -3' miRNA: 3'- -CGCGUCagCCGCGa----CCGGC----UGC-GCCu -5' |
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23798 | 3' | -62.5 | NC_005261.1 | + | 76779 | 0.66 | 0.63572 |
Target: 5'- gGCGCGGaCGcccccGCGCUGGCgCcGCGCGa- -3' miRNA: 3'- -CGCGUCaGC-----CGCGACCG-GcUGCGCcu -5' |
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23798 | 3' | -62.5 | NC_005261.1 | + | 37197 | 0.66 | 0.63572 |
Target: 5'- gGCGCuGcuggCGGCGCuacugUGGCUccCGCGGGc -3' miRNA: 3'- -CGCGuCa---GCCGCG-----ACCGGcuGCGCCU- -5' |
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23798 | 3' | -62.5 | NC_005261.1 | + | 108731 | 0.66 | 0.63572 |
Target: 5'- cGCGCGGgccagcggCGGCGCcgcGGCguccgCGGCGCGc- -3' miRNA: 3'- -CGCGUCa-------GCCGCGa--CCG-----GCUGCGCcu -5' |
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23798 | 3' | -62.5 | NC_005261.1 | + | 131692 | 0.66 | 0.63572 |
Target: 5'- uGCGCg--CGGCGCUGGaCCGccucgagagccAgGCGGc -3' miRNA: 3'- -CGCGucaGCCGCGACC-GGC-----------UgCGCCu -5' |
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23798 | 3' | -62.5 | NC_005261.1 | + | 37109 | 0.66 | 0.625913 |
Target: 5'- cGCGCGGcuguacucUCuGCGCgccGGCCGugGCa-- -3' miRNA: 3'- -CGCGUC--------AGcCGCGa--CCGGCugCGccu -5' |
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23798 | 3' | -62.5 | NC_005261.1 | + | 3808 | 0.66 | 0.625913 |
Target: 5'- cGCGCAGccgcUCGcGCGCUGccGCgGGCcCGGGc -3' miRNA: 3'- -CGCGUC----AGC-CGCGAC--CGgCUGcGCCU- -5' |
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23798 | 3' | -62.5 | NC_005261.1 | + | 71614 | 0.66 | 0.625913 |
Target: 5'- cCGCGGcCcgGGCGCgGGCCcgGGCgGCGGGa -3' miRNA: 3'- cGCGUCaG--CCGCGaCCGG--CUG-CGCCU- -5' |
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23798 | 3' | -62.5 | NC_005261.1 | + | 92222 | 0.66 | 0.625913 |
Target: 5'- gGCGUcGUCGGC-CccGCCGagcGCGCGGAu -3' miRNA: 3'- -CGCGuCAGCCGcGacCGGC---UGCGCCU- -5' |
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23798 | 3' | -62.5 | NC_005261.1 | + | 1277 | 0.66 | 0.625913 |
Target: 5'- uGUGC---CGGCGCccaGGCCGGCGgGGc -3' miRNA: 3'- -CGCGucaGCCGCGa--CCGGCUGCgCCu -5' |
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23798 | 3' | -62.5 | NC_005261.1 | + | 47381 | 0.66 | 0.625913 |
Target: 5'- cGCGCAcaaccGUCGGgGCgGcGCCGccccccgugcacACGCGGu -3' miRNA: 3'- -CGCGU-----CAGCCgCGaC-CGGC------------UGCGCCu -5' |
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23798 | 3' | -62.5 | NC_005261.1 | + | 55455 | 0.66 | 0.625913 |
Target: 5'- gGCGCGGUgGGCcagucgucGCUuaacacguccGGuCCGACGCGcGGc -3' miRNA: 3'- -CGCGUCAgCCG--------CGA----------CC-GGCUGCGC-CU- -5' |
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23798 | 3' | -62.5 | NC_005261.1 | + | 76123 | 0.66 | 0.625913 |
Target: 5'- cGCGCcgcGcCGGCGCccgucguggaGGUCGugGCGGc -3' miRNA: 3'- -CGCGu--CaGCCGCGa---------CCGGCugCGCCu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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