miRNA display CGI


Results 1 - 20 of 320 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23798 3' -62.5 NC_005261.1 + 77674 0.66 0.63572
Target:  5'- gGCGCAG--GGCGCggacgGGCCGggcuACGaCGGc -3'
miRNA:   3'- -CGCGUCagCCGCGa----CCGGC----UGC-GCCu -5'
23798 3' -62.5 NC_005261.1 + 37197 0.66 0.63572
Target:  5'- gGCGCuGcuggCGGCGCuacugUGGCUccCGCGGGc -3'
miRNA:   3'- -CGCGuCa---GCCGCG-----ACCGGcuGCGCCU- -5'
23798 3' -62.5 NC_005261.1 + 76779 0.66 0.63572
Target:  5'- gGCGCGGaCGcccccGCGCUGGCgCcGCGCGa- -3'
miRNA:   3'- -CGCGUCaGC-----CGCGACCG-GcUGCGCcu -5'
23798 3' -62.5 NC_005261.1 + 131692 0.66 0.63572
Target:  5'- uGCGCg--CGGCGCUGGaCCGccucgagagccAgGCGGc -3'
miRNA:   3'- -CGCGucaGCCGCGACC-GGC-----------UgCGCCu -5'
23798 3' -62.5 NC_005261.1 + 68560 0.66 0.63572
Target:  5'- uGCGCGGgcucuUUGaGCGCgucgccGCCGAgGCGGGc -3'
miRNA:   3'- -CGCGUC-----AGC-CGCGac----CGGCUgCGCCU- -5'
23798 3' -62.5 NC_005261.1 + 61030 0.66 0.63572
Target:  5'- gGgGCGGcaccgCGGCaGCUGGCUGGUGCuGGGc -3'
miRNA:   3'- -CgCGUCa----GCCG-CGACCGGCUGCG-CCU- -5'
23798 3' -62.5 NC_005261.1 + 14347 0.66 0.63572
Target:  5'- aGCaGCAG-CGGCaGCagccgcGGCCGGgGCGGc -3'
miRNA:   3'- -CG-CGUCaGCCG-CGa-----CCGGCUgCGCCu -5'
23798 3' -62.5 NC_005261.1 + 19071 0.66 0.63572
Target:  5'- uGCGCGGcucUCGGCGC-GuGCUuGCGUGGc -3'
miRNA:   3'- -CGCGUC---AGCCGCGaC-CGGcUGCGCCu -5'
23798 3' -62.5 NC_005261.1 + 105122 0.66 0.63572
Target:  5'- cGCGCGGgcgCGG-GCc-GCCGGCGCGc- -3'
miRNA:   3'- -CGCGUCa--GCCgCGacCGGCUGCGCcu -5'
23798 3' -62.5 NC_005261.1 + 81504 0.66 0.63572
Target:  5'- aGCGCGG-CGcGCGCgccgccGCCGGCGCcaggcgcugcaGGAc -3'
miRNA:   3'- -CGCGUCaGC-CGCGac----CGGCUGCG-----------CCU- -5'
23798 3' -62.5 NC_005261.1 + 88773 0.66 0.63572
Target:  5'- uGCGCuccUCGGCcCUGGCCGccgGCGCcgcgcagcaGGAc -3'
miRNA:   3'- -CGCGuc-AGCCGcGACCGGC---UGCG---------CCU- -5'
23798 3' -62.5 NC_005261.1 + 108731 0.66 0.63572
Target:  5'- cGCGCGGgccagcggCGGCGCcgcGGCguccgCGGCGCGc- -3'
miRNA:   3'- -CGCGUCa-------GCCGCGa--CCG-----GCUGCGCcu -5'
23798 3' -62.5 NC_005261.1 + 1277 0.66 0.625913
Target:  5'- uGUGC---CGGCGCccaGGCCGGCGgGGc -3'
miRNA:   3'- -CGCGucaGCCGCGa--CCGGCUGCgCCu -5'
23798 3' -62.5 NC_005261.1 + 37109 0.66 0.625913
Target:  5'- cGCGCGGcuguacucUCuGCGCgccGGCCGugGCa-- -3'
miRNA:   3'- -CGCGUC--------AGcCGCGa--CCGGCugCGccu -5'
23798 3' -62.5 NC_005261.1 + 123175 0.66 0.625913
Target:  5'- cGCGCGGgcgUGGUgGCUGGUguGgGCGGAc -3'
miRNA:   3'- -CGCGUCa--GCCG-CGACCGgcUgCGCCU- -5'
23798 3' -62.5 NC_005261.1 + 71614 0.66 0.625913
Target:  5'- cCGCGGcCcgGGCGCgGGCCcgGGCgGCGGGa -3'
miRNA:   3'- cGCGUCaG--CCGCGaCCGG--CUG-CGCCU- -5'
23798 3' -62.5 NC_005261.1 + 76123 0.66 0.625913
Target:  5'- cGCGCcgcGcCGGCGCccgucguggaGGUCGugGCGGc -3'
miRNA:   3'- -CGCGu--CaGCCGCGa---------CCGGCugCGCCu -5'
23798 3' -62.5 NC_005261.1 + 92222 0.66 0.625913
Target:  5'- gGCGUcGUCGGC-CccGCCGagcGCGCGGAu -3'
miRNA:   3'- -CGCGuCAGCCGcGacCGGC---UGCGCCU- -5'
23798 3' -62.5 NC_005261.1 + 47381 0.66 0.625913
Target:  5'- cGCGCAcaaccGUCGGgGCgGcGCCGccccccgugcacACGCGGu -3'
miRNA:   3'- -CGCGU-----CAGCCgCGaC-CGGC------------UGCGCCu -5'
23798 3' -62.5 NC_005261.1 + 3808 0.66 0.625913
Target:  5'- cGCGCAGccgcUCGcGCGCUGccGCgGGCcCGGGc -3'
miRNA:   3'- -CGCGUC----AGC-CGCGAC--CGgCUGcGCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.